View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12604_low_10 (Length: 250)
Name: NF12604_low_10
Description: NF12604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12604_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 36 - 181
Target Start/End: Complemental strand, 23203503 - 23203353
Alignment:
| Q |
36 |
agggttgatgcacttaaacctgaattgtttaagacgaagtccttgtttcttcctttcttatagttcaata-----ttgataatttttagtgtttataaat |
130 |
Q |
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| T |
23203503 |
agggctgatgcacttaaatctgaattgtttaagagggagtctatgtttcttcttttcttatagttcaatatttatttgataatttctagagttcataaaa |
23203404 |
T |
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| Q |
131 |
attctgttgatgggatatttgggtttaacttttatgcttatcacaagatat |
181 |
Q |
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| T |
23203403 |
attctgctgatgggatattggcttttaacttttatccttatcacaagatat |
23203353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 23202877 - 23202795
Alignment:
| Q |
153 |
gtttaacttttatgcttatcacaagatataatttcttaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
239 |
Q |
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| T |
23202877 |
gtttatcttctatgcttatcaca----acaatttattaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
23202795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 9488728 - 9488767
Alignment:
| Q |
200 |
ttgaatttattttaattgtaggttgtgaacgagccctttg |
239 |
Q |
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| T |
9488728 |
ttgaatttattttaattgtaggttgtgaaggagccctttg |
9488767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 13860450 - 13860394
Alignment:
| Q |
183 |
atttcttaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
239 |
Q |
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| T |
13860450 |
atttattaatattgcttttcaatgtattttaattgtaggttgtgaagaagccctttg |
13860394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 90
Target Start/End: Complemental strand, 13860625 - 13860582
Alignment:
| Q |
47 |
acttaaacctgaattgtttaagacgaagtccttgtttcttcctt |
90 |
Q |
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| T |
13860625 |
acttaaacctgaattgtttaagagggagtccatgtttcttcctt |
13860582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 176
Target Start/End: Complemental strand, 7687364 - 7687225
Alignment:
| Q |
36 |
agggttgatgcacttaaacctgaattgtttaagacgaagtccttgtttcttcctttcttatagttcaatattgataatttttagtgtttataaatattct |
135 |
Q |
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| T |
7687364 |
agggtttatggacttaaacctgaattgtttaagagacagtctatgtttctaccttccttatagttcaatattgataatttatagagttcttaaa-gttat |
7687266 |
T |
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| Q |
136 |
gttgatgggatatttgggtttaacttttatgcttatcacaa |
176 |
Q |
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| T |
7687265 |
gttgatggaatattgtggtttaaattttatgcttatcacaa |
7687225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 180 - 239
Target Start/End: Complemental strand, 7686108 - 7686049
Alignment:
| Q |
180 |
ataatttcttaatattgcatttgaatttattttaattgtaggttgtgaacgagccctttg |
239 |
Q |
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| T |
7686108 |
ataatttcttaatattgcatttgaatttattttgattgtagatcgtgaaggagccctttg |
7686049 |
T |
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