View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12604_low_13 (Length: 226)
Name: NF12604_low_13
Description: NF12604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12604_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40628121 - 40627902
Alignment:
| Q |
1 |
ccgtcaccaccaagcggcggtggtggcggcacttgccaatcctccggcaccttacagtgcnnnnnnnnntcataccctcaatataggtgttctccaccag |
100 |
Q |
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| T |
40628121 |
ccgtcaccaccaagtggcggtggtggcggcacttgccaatcctccggcaccttacagtgcaaaaaaaaatcataccctcaatataggtgttctccaccag |
40628022 |
T |
|
| Q |
101 |
tttcatcctctacacaagcatcactcacgctcaacgatttcagcgagggtggagacggaggaggtccgtctcaatgcgatgaaaaataccacgacaactc |
200 |
Q |
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| T |
40628021 |
tttcatcctctacacaagcatcactcacgctcaacgatttcagcgagggtggagacggaggaggtccgtctcaatgcgatgaaaaataccacgacaactc |
40627922 |
T |
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| Q |
201 |
ggaaagagtggtggctttgt |
220 |
Q |
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|||||||||||||||||||| |
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| T |
40627921 |
ggaaagagtggtggctttgt |
40627902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 163
Target Start/End: Original strand, 40641151 - 40641244
Alignment:
| Q |
70 |
tcataccctcaatataggtgttctccaccagtttcatcctctacacaagcatcactcacgctcaacgatttcagcgagggtggagacggaggag |
163 |
Q |
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| T |
40641151 |
tcattccctcaattcaagtgctctccaccagtctcatcttccacacaagcattactcacgttgaatgatttcagcgagggtggagacgaaggag |
40641244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 40610842 - 40610746
Alignment:
| Q |
74 |
accctcaatataggtgttctccaccagtttcatcctctacacaagcatcactcacgctcaacgatttcagcgagggtggagacggaggaggtccgtc |
170 |
Q |
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| T |
40610842 |
accctcaataccagtgctctccacgagtttcatcctccacacaagcattactcacgtggaatgatttcagtgaaggaggaagtggaggaggtccgtc |
40610746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 98
Target Start/End: Complemental strand, 40617477 - 40617449
Alignment:
| Q |
70 |
tcataccctcaatataggtgttctccacc |
98 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40617477 |
tcataccctcaatataggtgttctccacc |
40617449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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