View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12604_low_15 (Length: 214)
Name: NF12604_low_15
Description: NF12604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12604_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 25431021 - 25431202
Alignment:
| Q |
15 |
cacagagtagttggttctttataatgtaagtgtatcccttatgctatnnnnnnnngctagaagacagcagcgagcctatgatcattgtaggttatcacaa |
114 |
Q |
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| T |
25431021 |
cacagagtagttggttctttataatgtaagtgtatcccttatgctataaaaaaaaattagaagacaacagcgagcctataatcattgtaggttatcacaa |
25431120 |
T |
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| Q |
115 |
aacttggagcatacagactactcaacctgttaacaatgaacactgggactgaaaaacaaatgaatacaatgtctctactaag |
196 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
25431121 |
aacttggagcatacagactactcaacccgttaacaatgaacactgggactggaaaaaaaatgaatacaatgtctctactaag |
25431202 |
T |
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