View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12604_low_3 (Length: 391)
Name: NF12604_low_3
Description: NF12604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12604_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 147 - 373
Target Start/End: Original strand, 49653217 - 49653443
Alignment:
| Q |
147 |
gtgaaatgagagagtagaatgaatgagtgatattgaagtggcagagaaaagcaacagaaggagcagtgtgttcttgggtcattgtcacattatactactt |
246 |
Q |
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| T |
49653217 |
gtgaaatgagagagtagaatgaatgagtgatattgaagtggcagagaaaagcaacagaaggagcagtgtgttcttgggtcattgtcacattatactactt |
49653316 |
T |
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| Q |
247 |
tggtacccatcttggcttgtttcctttgttttcttggcattttcctcatctcactttcattttgatttcaagtttccaattccctctcactctcccaacc |
346 |
Q |
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| T |
49653317 |
tggtacccatcttggcttgtttcctttgttttcttggcattttcctcttctcactttcattttgatttcaagtttccaattccctctcactctcccaacc |
49653416 |
T |
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| Q |
347 |
acttctctctaatggatgctacctcac |
373 |
Q |
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| T |
49653417 |
acttctctctaatggatgctacctcac |
49653443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 49653074 - 49653153
Alignment:
| Q |
4 |
atgtcatgttcgatattcatgtccgtacagtagtttatagtaaccgagtgagtaatgagttgaactgtataaaagcttta |
83 |
Q |
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| T |
49653074 |
atgtcgtgttcgatattcatgtccgtacagtagtttatagtaactgagtgagtaatgagttgaactgtataaaagcttta |
49653153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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