View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12604_low_4 (Length: 369)
Name: NF12604_low_4
Description: NF12604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12604_low_4 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 25 - 369
Target Start/End: Complemental strand, 3958244 - 3957900
Alignment:
| Q |
25 |
gtataataatcgtaattataaaaagtaatttttataactcgaatgttaagcgtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttca |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3958244 |
gtataataatcgtaattataaaaagtaatttttataactcgaatgttaagcatgtctacttacatcaaactatagacttctgtgtaaatcaaattcttca |
3958145 |
T |
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| Q |
125 |
tcttcagctgcatgatgtaatgttgaataactcgacttctatccatatctaccgactacttacatcaaactatggacttgtgtctaaatcaacttcttca |
224 |
Q |
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| T |
3958144 |
tcttcagttgcatgatgtaatgttgaataactcgactgctatccatatctaccgactacttacatcaaactatggacttgtgtctaaatcaacttcttca |
3958045 |
T |
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| Q |
225 |
tcttcagccggaggaaagaaatacatatgataatgctaagcacagtcctactccatttgttaacataatcaaataattccatttgttcaacgatgttttt |
324 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3958044 |
tcttcagccggaggaaagaaatacatatgatgatgctaagcacagtcctactccatttgttaacataatcaaataattccatttgttcaacgatgttttt |
3957945 |
T |
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| Q |
325 |
atctcttaaggggattatgggtctgacgccaaacccttttaactc |
369 |
Q |
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| T |
3957944 |
atctcttaaggggattatgggtctgatgccaaacccttttaactc |
3957900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 180 - 287
Target Start/End: Original strand, 3998481 - 3998588
Alignment:
| Q |
180 |
ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgataatgctaagcacagtcctactcca |
279 |
Q |
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| T |
3998481 |
ctacttgcatcatactatagagttgtgtctaaatcaaattcttcatcttcaactgtaggaaggaaatacataggacgatactaagcacagtcctattcca |
3998580 |
T |
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| Q |
280 |
tttgttaa |
287 |
Q |
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|||||||| |
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| T |
3998581 |
tttgttaa |
3998588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 207 - 308
Target Start/End: Original strand, 4007473 - 4007574
Alignment:
| Q |
207 |
tctaaatcaacttcttcatcttcagccggaggaaagaaatacatatgataatgctaagcacagtcctactccatttgttaacataatcaaataattccat |
306 |
Q |
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|||| ||||| ||||||||||||| | | |||| |||||||||| ||| || ||||||||||||||| |||||||||| | ||||||||| |||||||| |
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| T |
4007473 |
tctagatcaaattcttcatcttcaactgtaggagggaaatacataggatgatactaagcacagtcctattccatttgttcatataatcaaacaattccat |
4007572 |
T |
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| Q |
307 |
tt |
308 |
Q |
| |
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|| |
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| T |
4007573 |
tt |
4007574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 3998438 - 3998531
Alignment:
| Q |
37 |
taattataaaaagtaatttttataactcgaatgttaagcgtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttca |
130 |
Q |
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|||| ||| |||||||| || |||||| | |||||| |||||||||| ||||| |||||||| |||||| |||||||||||||||||||||| |
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| T |
3998438 |
taatgatagaaagtaatgttggtaactcaactgttaactgtgtctacttgcatcatactatagagttgtgtctaaatcaaattcttcatcttca |
3998531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 4022623 - 4022678
Alignment:
| Q |
76 |
gtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttcag |
131 |
Q |
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| T |
4022623 |
gtgtctacttacatcaatctatagacttgtgactaaatcaacttcttcatcttcag |
4022678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 4022627 - 4022678
Alignment:
| Q |
180 |
ctacttacatcaaactatggacttgtgtctaaatcaacttcttcatcttcag |
231 |
Q |
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| T |
4022627 |
ctacttacatcaatctatagacttgtgactaaatcaacttcttcatcttcag |
4022678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 3984567 - 3984668
Alignment:
| Q |
219 |
tcttcatcttcagccggaggaaagaaatacatatgataatgctaagca---cagtcctactccatttgttaacataatcaaataattccatttgttcaac |
315 |
Q |
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|||||||||||||| | || || |||||||||| ||| |||||||||| ||||||| |||||||||||| | |||||| ||||||||||| ||||| |
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| T |
3984567 |
tcttcatcttcagctgcagtaaggaaatacataggatgatgctaagcagcacagtcctcttccatttgttaatacgatcaaacaattccatttgctcaac |
3984666 |
T |
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| Q |
316 |
ga |
317 |
Q |
| |
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|| |
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| T |
3984667 |
ga |
3984668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 130
Target Start/End: Original strand, 3984475 - 3984560
Alignment:
| Q |
42 |
ataaaaagtaatttttataactcgaatgttaagcgtgtctacttacatcaaactatagacttgtgtgtaaatcaaattcttcatcttca |
130 |
Q |
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|||| ||||||| || |||||||||||||||| |||| ||||||||||| |||| | ||||| |||||||| ||||||||||||| |
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| T |
3984475 |
ataagaagtaatgttgataactcgaatgttaatcgtggttacttacatcagactaca---ttgtgcctaaatcaacttcttcatcttca |
3984560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 220
Target Start/End: Original strand, 4015067 - 4015107
Alignment:
| Q |
181 |
tacttacatcaaactatggacttg-tgtctaaatcaacttc |
220 |
Q |
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| T |
4015067 |
tacttacatcaaactatagacttgttgtctaaatcaacttc |
4015107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 4022686 - 4022730
Alignment:
| Q |
260 |
ctaagcacagtcctactccatttgttaacataatcaaataattcc |
304 |
Q |
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|||| |||||||||| |||||| ||||||||||||||| |||||| |
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| T |
4022686 |
ctaaccacagtcctattccattggttaacataatcaaacaattcc |
4022730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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