View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12604_low_7 (Length: 291)
Name: NF12604_low_7
Description: NF12604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12604_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 40628200 - 40628459
Alignment:
| Q |
1 |
acaatcattgagagtgttgcatggtccattgcatgaggaaatagcatttgtgaggaatggaatgtttataatattgaaaaggaaaatgcaagctagaaaa |
100 |
Q |
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| T |
40628200 |
acaatcattgagagtgttgcatggtccattgcatgaggaaatagcatttgtgaggaatggaatgtttataatattgaaaaggaaaatgcaagctagaaaa |
40628299 |
T |
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| Q |
101 |
ataagatttgatatgcgagccatcgagattagaacagagagagtggattgtttttgtttgcttgaaagtgttaatttggattagggcaattgcatatcct |
200 |
Q |
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| T |
40628300 |
ataagatttgatatgcgagccatcgagattagaacagagagagtggattgtttttgtttgcttgaaagtgttaatttggattagggcaattgcatatcct |
40628399 |
T |
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| Q |
201 |
tatatagagtttcgaaagttg-----tattgtacccatcaaggagttattacacctaact |
255 |
Q |
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| T |
40628400 |
tatatagagtttcaaaagttgtattatattgtacccatcaaggagttattacacctaact |
40628459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 40641005 - 40640879
Alignment:
| Q |
8 |
ttgagagtgttgcatggtccattgcatgaggaaatagcatttgtgaggaatggaatgtttataatattgaaaaggaaaatgcaagctagaaaaataagat |
107 |
Q |
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| T |
40641005 |
ttgagagttttacaaggtccgttgcatgaggaaataacatttgtaaggaatggaatgtttatgatgttgaaaaggaaaatggaagctaaaaaaacaagat |
40640906 |
T |
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| Q |
108 |
ttgatatgcgagccatcgagattagaa |
134 |
Q |
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| T |
40640905 |
ttgaaacgtgagccattgagattagaa |
40640879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 40611006 - 40611145
Alignment:
| Q |
16 |
gttgcatggtccattgcatgaggaaatagcatttgtgaggaatggaatgtttataatattgaaaaggaaaatgcaagctagaaaaataagatttgatatg |
115 |
Q |
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| T |
40611006 |
gttgcatcctccgttgcatgaagaaatagcgttggtgaggaaaggaaggtttgtaatgttgaaaaggaaaatggaagctagaaaaacaagatttgatatg |
40611105 |
T |
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| Q |
116 |
cgagccatcgagattagaacagagagagtggattgttttt |
155 |
Q |
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| T |
40611106 |
agagtcattgagagtatagtagagagagtgggtggttttt |
40611145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 40617650 - 40617768
Alignment:
| Q |
23 |
ggtccattgcatgaggaaatagcatttgtgaggaatggaatgtttataatattgaaaaggaaaatgcaagctagaaaaataagatttgatatgcgagcca |
122 |
Q |
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| T |
40617650 |
ggtccgttgcatgaggaaatagcatccgtgaggaatggaccgtttatgatgttaaaaaagaaaatggaagctaaaaaaacaagatttgatatctgagcca |
40617749 |
T |
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| Q |
123 |
tcgagattagaacagagag |
141 |
Q |
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| T |
40617750 |
ttgagattagaatagagag |
40617768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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