View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12605_high_12 (Length: 226)

Name: NF12605_high_12

Description: NF12605

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF12605_high_12

[»] chr3 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 131; E-Value: 4e-68

Query Start/End: Original strand, 5 - 203

Target Start/End: Original strand, 3812817 - 3813015

Alignment:

Q	5	aataggcataataagtaaattgttgcttgcacttaggcactacataacatgtatgcacttaggcattacataaaaaagacatcaaaataagcattatatc	104	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|
T	3812817	aataagcataataagtagattgtagcttgcacttaggcattacataacatgtattcacttaggcattacatcaaaaagacatcaaaacaggcataatatc	3812916	T

Q	105	tagagtggtccatgattcctactgttgggttgacacataaccctccattctaacataagttttctttttcctcccatttgaaccttctggttgtgatgt	203	Q
		\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3812917	taaagtgttccatgattcctactgttgggttgacacagaaccctcaactctaacagaagttttccttttcttcccatttgaaccttctggttgtgatgt	3813015	T

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Target: chr8 (Bit Score: 82; Significance: 7e-39; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 82; E-Value: 7e-39

Query Start/End: Original strand, 5 - 203

Target Start/End: Original strand, 23704282 - 23704468

Alignment:

Q	5	aataggcataataagtaaattgttgcttgcacttaggcactacataacatgtatgcacttaggcattacataaaaaagacatcaaaataagcattatatc	104	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23704282	aataagcataataagtagactgtatcttgcacttaggcattacataacatgtatgcacttaggcattacatcaaaaagacatcaaaata-----------	23704370	T

Q	105	tagagtggtccatgattcctactgttgggttgacacataaccctccattctaacataagttttctttttcctcccatttgaaccttctggttgtgatgt	203	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	23704371	-gaagttttccatgattcctactgttgggttgacacagaaccctcaactctaacaaaagtttttcttttcttcccatttgcaccttctggttgtgatgt	23704468	T

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