View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12605_high_3 (Length: 440)
Name: NF12605_high_3
Description: NF12605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12605_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 23 - 431
Target Start/End: Original strand, 3562119 - 3562526
Alignment:
| Q |
23 |
ttcttgtatcaatgcaacaaaaatggttaagattagacttatgcccaagaacattgnnnnnnnnnnnnnnnnnaatgacctcaaatgaattatatatann |
122 |
Q |
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| T |
3562119 |
ttcttgtatcaatgcaacaaaaatggttaagattagacttatgcccaagaacattgaataataataataataaaatgacctcaaatgaattatatatatt |
3562218 |
T |
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| Q |
123 |
nnnnnnaaaaccaaaaggagagggacagcaaagagctgcaacctcaaaatatatatattaagaagagaaacacaaaaggaaaaacaaaggagggggacat |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3562219 |
ttttt-aaaaccaaaaggagagggacagcaaagagctgcaacctcaaaatatatatattaagaagagaaacacaaaaggaaaaacaaaggagggggacat |
3562317 |
T |
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| Q |
223 |
aaacctaacctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattctatgataaacaagggtacatctgttcacaca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
3562318 |
aaacctaacctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattctctgataaacaagggtacatctgtccacaca |
3562417 |
T |
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| Q |
323 |
gttaaacaattagcattcagtccccatgctgtcaagctatcggcacattgattcccttctctgtatatgtgcgttacaatgaagttcatgttatccagca |
422 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3562418 |
gttaaacaattagcattcagtccccatgctgccaagctatcggcacattgattcccttctctgtatatgtgtgttacaatgaagttcatgttatccagca |
3562517 |
T |
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| Q |
423 |
tccctttgc |
431 |
Q |
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||||||||| |
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| T |
3562518 |
tccctttgc |
3562526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 205 - 292
Target Start/End: Original strand, 9748856 - 9748944
Alignment:
| Q |
205 |
aacaaaggagggggacataaacctaa-cctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattct |
292 |
Q |
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| T |
9748856 |
aacaaaggagagggacataaaaccaagccttgtaaaaattgataaacctaaagttaggcatacctagtctattcttaacataatattct |
9748944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 229 - 284
Target Start/End: Original strand, 34066064 - 34066119
Alignment:
| Q |
229 |
aacctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacat |
284 |
Q |
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| T |
34066064 |
aacctcctagaaattgctaaacctataattaggcataccaagtctattcttaacat |
34066119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 22934512 - 22934420
Alignment:
| Q |
208 |
aaaggagggggacataa-acctaa-cctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattctatgata |
298 |
Q |
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||||||||||||||||| ||| || ||||||| || ||||||||||||||||||||||||||||| | ||| || |||||| ||||| ||||| |
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| T |
22934512 |
aaaggagggggacataagaccaaaacctcctaaaaattgataaacctaaaattaggcataccaagacgatttttgacataaaattctctgata |
22934420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 21025700 - 21025757
Alignment:
| Q |
208 |
aaaggagggggacataa-acctaa-cctcctagaagttgataaacctaaaattaggca |
263 |
Q |
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| T |
21025700 |
aaaggagggggacataagaccaaaacctcctaaaaattgataaacctaaaattaggca |
21025757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 298
Target Start/End: Complemental strand, 23352460 - 23352368
Alignment:
| Q |
208 |
aaaggagggggacataa-acctaa-cctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattctatgata |
298 |
Q |
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||||||||||||||||| ||| || ||||||| || ||||||||||||||||||||||||||||| | ||| || |||||| ||||| ||||| |
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| T |
23352460 |
aaaggagggggacataagaccaaaacctcctaaaaattgataaacctaaaattaggcataccaagacgatttttgacataaaattctctgata |
23352368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 30039593 - 30039661
Alignment:
| Q |
208 |
aaaggagggggacataaacctaa-cctcctagaagttgataaacctaaaattaggcataccaagtctat |
275 |
Q |
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|||||||||||||| | ||| || || |||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30039593 |
aaaggagggggacagataccaaaaccacctagaagttgataaacctaaagttaggcataccaagtctat |
30039661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 280
Target Start/End: Complemental strand, 17704580 - 17704529
Alignment:
| Q |
229 |
aacctcctagaagttgataaacctaaaattaggcataccaagtctattctta |
280 |
Q |
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|||||||| ||||||||||||||||||||||||||| | || |||||||||| |
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| T |
17704580 |
aacctcctcgaagttgataaacctaaaattaggcatgctaattctattctta |
17704529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 292
Target Start/End: Original strand, 7728120 - 7728181
Alignment:
| Q |
229 |
aacctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattct |
292 |
Q |
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|||||||||| | |||||||||||| | ||||||| |||||||||||||| ||||| |||||| |
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| T |
7728120 |
aacctcctaggaattgataaacctatagttaggca--ccaagtctattctttacatagtattct |
7728181 |
T |
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