View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12605_low_10 (Length: 268)
Name: NF12605_low_10
Description: NF12605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12605_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 57 - 265
Target Start/End: Original strand, 37761252 - 37761466
Alignment:
| Q |
57 |
gaaacatttcaattttcaaatcaaacagctgtatacgaccaagatattcataaaccatgaaaagaata------ataataataaggtacagtatatgaaa |
150 |
Q |
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| T |
37761252 |
gaaacatttcaattttcaaatcaaacagctgtatacgaccaagatattcataaaccatgaaaagaataataataataataataaggtacagtatatgaaa |
37761351 |
T |
|
| Q |
151 |
ttgaaaccttctcagcagaagaggttgaaacctgaagctgctcannnnnnncttccaatttcttctgcaatttaccaatttccaattccataaccttggc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37761352 |
ttgaaaccttctcagcagaagaggttgaaacctgaagctgctcatttttttcttccaatttcttctgcaatttaccaatttccaattccataaccttggc |
37761451 |
T |
|
| Q |
251 |
atttgtctctgcttc |
265 |
Q |
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||||||||||||||| |
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| T |
37761452 |
atttgtctctgcttc |
37761466 |
T |
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