View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12605_low_15 (Length: 242)
Name: NF12605_low_15
Description: NF12605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12605_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 28491116 - 28491352
Alignment:
| Q |
1 |
caagtccttcacctctttaatattttccctaaacatcctcccctcttcttcaagcataa---gtctaattgagcgagccactgagtcacttgtgaatgac |
97 |
Q |
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| T |
28491116 |
caagtccttcacctctttaatattttccctatatatcctcccttcttcttcaagcataactagtctaattgtgcgagccactgagtcacttgtgaatgac |
28491215 |
T |
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| Q |
98 |
ccatcttgctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcacatttattccctggtctgcaagaaatgtcatcaacacaagtg |
197 |
Q |
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| T |
28491216 |
ccatcttgctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcgcatttattccctggtctacaagaaatgtcatcaacacaagtg |
28491315 |
T |
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| Q |
198 |
gcttttcgttttgaactgcttccaccactgatgtcca |
234 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
28491316 |
gcttctcgttttgaactgcttccaccactgatgtcca |
28491352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 28494451 - 28494671
Alignment:
| Q |
17 |
ttaatattttccctaaacatcctcccctcttcttcaagcataagt---ctaattgagcgagccactgagtcacttgtgaatgacccatcttgctcatctc |
113 |
Q |
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|||||||| |||||| | ||||| ||||||||||||| ||||| | ||||| ||| ||||||| ||||||||||| ||||||||| |||||||| |
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| T |
28494451 |
ttaatattatccctatagatccttccctcttcttcaaccataactaacctaatcgagtgagccaccatatcacttgtgaaagacccatctctctcatctc |
28494550 |
T |
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| Q |
114 |
taggcaccgtgtatgccatcttcttttcttccaacaccttcacatttattccctggtctgcaagaaatgtcatcaacacaagtggcttttcgttttgaac |
213 |
Q |
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| T |
28494551 |
taggcactgagtatcccatcttcttttcttccaacattcttgcatttattccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaac |
28494650 |
T |
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| Q |
214 |
tgcttccaccactgatgtcca |
234 |
Q |
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| T |
28494651 |
tgcttctaccaccgatgtcca |
28494671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 28506997 - 28507217
Alignment:
| Q |
17 |
ttaatattttccctaaacatcctcccctcttcttcaagcataa---gtctaattgagcgagccactgagtcacttgtgaatgacccatcttgctcatctc |
113 |
Q |
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||||||||||| ||| | ||| | ||||||||||||| || || | ||||||||| |||| || || ||||||||||| ||||||||| |||||||| |
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| T |
28506997 |
ttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaattgagtgagcaaccgaatcacttgtgaaagacccatctctctcatctc |
28507096 |
T |
|
| Q |
114 |
taggcaccgtgtatgccatcttcttttcttccaacaccttcacatttattccctggtctgcaagaaatgtcatcaacacaagtggcttttcgttttgaac |
213 |
Q |
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||||||| | ||| ||||||||||||| |||||||| | |||||||||| || |||| |||| | |||| ||||||||||||||| || | |||||| |
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| T |
28507097 |
taggcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgaaagatacgtcaacaacacaagtggcttctcatgttgaac |
28507196 |
T |
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| Q |
214 |
tgcttccaccactgatgtcca |
234 |
Q |
| |
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||| || ||||| |||||||| |
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| T |
28507197 |
tgcctctaccaccgatgtcca |
28507217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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