View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12605_low_2 (Length: 472)
Name: NF12605_low_2
Description: NF12605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12605_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Original strand, 36926382 - 36926835
Alignment:
| Q |
1 |
ctgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36926382 |
ctgcagtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaa |
36926481 |
T |
|
| Q |
101 |
tgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36926482 |
tgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggcat |
36926581 |
T |
|
| Q |
201 |
gctagtgatgaggtctaccttggacagagagacactccagattggacttccgacataaaggcattggaggcttttgagaagtttggcaataaacttgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36926582 |
gctagtgatgaggtctaccttggacagagagacactccagattggacttctgacataaaggcattggaggcttttgagaagtttggcaataagcttgttg |
36926681 |
T |
|
| Q |
301 |
aaattgagaaaaggattgggataatgaacaatgatgagaaactgaaaaacaggtttggtcctgttaagatgccatacactttgcttaaacctactagtga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
36926682 |
aaattgagaaaaggattgggataatgaacaatgatgagaaactgaaaaacaggtttggtcctgttaagatgtcatacactttgcttaaacctactagtga |
36926781 |
T |
|
| Q |
401 |
aggtggactaactggtatggggattcctaatagcatctcaatttaatatggcta |
454 |
Q |
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| T |
36926782 |
aggtggactaactggtatggggattcctaatagcatctcgatttaatatggcta |
36926835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 6 - 199
Target Start/End: Complemental strand, 49608419 - 49608226
Alignment:
| Q |
6 |
gtcaactttggacagtatccatatggaggctatccaccgagtcgtccttctatgagccgacgactcatgcctgaaaaaggaactcaagagtacaatgaac |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| || || || || |||| || ||||||||||||||||| | |||||||| |||||| ||| |
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| T |
49608419 |
gtcaactttggacattatccatatggaggctatccaccaagcagttctactctgagtcggtgactcatgcctgaaaaaaggactcaagaatacaatcaac |
49608320 |
T |
|
| Q |
106 |
ttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttggtctttcacttgtggaaatattgtctaggca |
199 |
Q |
| |
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|| |||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||| |||||||| || |||| |||||| |||| |
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| T |
49608319 |
ttgtggaaaatcctgacaagccttttttgaagacaattacttcacagtttcaagctgttcttgacatttcacttttgaaaatcttgtctgggca |
49608226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 263 - 343
Target Start/End: Complemental strand, 49608184 - 49608103
Alignment:
| Q |
263 |
attggaggctttt-gagaagtttggcaataaacttgttgaaattgagaaaaggattgggataatgaacaatgatgagaaact |
343 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
49608184 |
attggaggctttttgagaagtttgacaataaacttgcagaaattgagaaaaggattgtgataatgaacaatgatgaaaaact |
49608103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 451
Target Start/End: Complemental strand, 49608074 - 49608019
Alignment:
| Q |
396 |
agtgaaggtggactaactggtatggggattcctaatagcatctcaatttaatatgg |
451 |
Q |
| |
|
|||||||| |||| |||||| || |||||||||||||||||||||||||||||||| |
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| T |
49608074 |
agtgaaggaggacgaactggcatagggattcctaatagcatctcaatttaatatgg |
49608019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 66 - 200
Target Start/End: Original strand, 386538 - 386672
Alignment:
| Q |
66 |
cgactcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttc |
165 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||| |||||| |||||||||| |||| |||||| | |||||||| |||||||||||||||||||||| |
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| T |
386538 |
cgactcatgcctgaaataggaactcaagaatacaacgaacttgaggaaaatcctcacaaggcttttttaaaaacaattacttcacagtttcaagctgttc |
386637 |
T |
|
| Q |
166 |
ttggtctttcacttgtggaaatattgtctaggcat |
200 |
Q |
| |
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|||| |||||| ||||| |||| |||||||||||| |
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| T |
386638 |
ttggcctttcaattgtgaaaatcttgtctaggcat |
386672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 283
Target Start/End: Complemental strand, 42692010 - 42691910
Alignment:
| Q |
183 |
gaaatattgtctaggcatgctagtgatgaggtctaccttggacagagagacactccagattggacttccgacataaaggcattggaggcttttgagaagt |
282 |
Q |
| |
|
||||||||||| ||||| ||| |||||| || ||||||||| ||||||||| |||| | ||||| || || | || |||||| ||||| ||| |||||| |
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| T |
42692010 |
gaaatattgtcaaggcacgcttctgatgaagtgtaccttggagagagagacaatccaaactggacatcagatacaagggcattagaggcctttaagaagt |
42691911 |
T |
|
| Q |
283 |
t |
283 |
Q |
| |
|
| |
|
|
| T |
42691910 |
t |
42691910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 70 - 234
Target Start/End: Complemental strand, 46709140 - 46708976
Alignment:
| Q |
70 |
tcatgcctgaaaaaggaactcaagagtacaatgaacttttggaaaatcctgacaaagcttttctgaaaacaatcacttcacagtttcaagctgttcttgg |
169 |
Q |
| |
|
|||||||||| ||||||||| |||||| |||||||| || ||||||||| ||||||||| ||||||||||||| |||| || || || || |||| |
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| T |
46709140 |
tcatgcctgagaaaggaactatagagtatgatgaacttgtgacaaatcctgataaagcttttttgaaaacaatcacggcacaattgcagactcttgttgg |
46709041 |
T |
|
| Q |
170 |
tctttcacttgtggaaatattgtctaggcatgctagtgatgaggtctaccttggacagagagaca |
234 |
Q |
| |
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|||| ||| | ||||| ||||||| ||| || ||||||||||||||||||||| ||||||| |
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| T |
46709040 |
catttcgcttatagaaattttgtctacacattcttctgatgaggtctaccttggacaaagagaca |
46708976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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