View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12605_low_4 (Length: 430)
Name: NF12605_low_4
Description: NF12605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12605_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 8 - 412
Target Start/End: Complemental strand, 22000635 - 22000230
Alignment:
| Q |
8 |
agagatgaatggattggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgtt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22000635 |
agagatgaatggattggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgtt |
22000536 |
T |
|
| Q |
108 |
ggattggttcctcatgtgcaacttcggatttcttttcaccaaataaatgataactatatagcataaacacaaaaaatgaagaacagatttagtgagacac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
22000535 |
ggattggttcctcatgtgcaacttcggatttcttttcaccaaataaatgataactatatagcagaaacacaaaaaatgaagaacaaatttagtgagacac |
22000436 |
T |
|
| Q |
208 |
taaattagttgttatcagcgaggcactgctactctttcattcagcatggagaacaaa-ttaggtcttttttagtcattatcaatgagaattgcataattc |
306 |
Q |
| |
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|| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
22000435 |
tacattagttgttatcagtgaggcactgttactctttcattcagcatggagaacaaatttagtccttttttagtcattatcaatgagaattgcataattc |
22000336 |
T |
|
| Q |
307 |
tcatttaaagccaatgttttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttgaaact |
406 |
Q |
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|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22000335 |
tcatttaaagccaatgttttttctttgttatcattgcttaattagttatccaattgaatgttgtgttgtcgtcttggttatattacttagatttgaaact |
22000236 |
T |
|
| Q |
407 |
ggaatg |
412 |
Q |
| |
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|||||| |
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|
| T |
22000235 |
ggaatg |
22000230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 6723902 - 6724039
Alignment:
| Q |
8 |
agagatgaatggattggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgtt |
107 |
Q |
| |
|
|||||||||||| |||||||||||| ||| | |||||||| ||| || ||| | | | ||| | |||| |||| |||||||||||||||||| ||| |
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| T |
6723902 |
agagatgaatgggttggcttctatgaatttgttaccacaaattgtgtaaaacggcatattagcatacatttgaagatggaagtaagcttatggtgtagtt |
6724001 |
T |
|
| Q |
108 |
ggattggttcctcatgtgcaacttcggatttcttttca |
145 |
Q |
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|||||||||||||||||||||||| | |||||||||| |
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| T |
6724002 |
ggattggttcctcatgtgcaactttagttttcttttca |
6724039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 37983460 - 37983844
Alignment:
| Q |
8 |
agagatgaatggattggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37983460 |
agagatgaatggattggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgtt |
37983559 |
T |
|
| Q |
108 |
ggattggttcctcatgtgcaacttcggatttcttttcaccaaataaatgataactatatagcataaacacaaaaaatgaagaacagatttagtgagacac |
207 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
37983560 |
ggattggttcctcatgtgcaacttcggatttcttttcaccaaataaat-ataactatatagcagaaacacaaaaaatgaagaacagatttagtgagacac |
37983658 |
T |
|
| Q |
208 |
taaattagttgttatcagcgaggcactgctactctttcattcagcatggagaacaaa-ttaggtcttttttagtcattatcaatgagaattgcataattc |
306 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| |
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| T |
37983659 |
tatattagttgttatcagtgaggcactgctactctttcattcagcatggagaacaaatttagtcctcttttagtcattatc------------------- |
37983739 |
T |
|
| Q |
307 |
tcatttaaagccaatgttttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttgaaact |
406 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
37983740 |
-catttaaagccaatgttttttgtttgttatcattgcgtgattagttatccaattgaatgttgtgttgtcgtcttggttatattacttagatttgaaact |
37983838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 412
Target Start/End: Original strand, 17688219 - 17688606
Alignment:
| Q |
8 |
agagatgaatggattggcttctatgcattagctaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17688219 |
agagatgaatggattggcttctatgcattagttaccacaagttgagttaaatgccttcatagaacacatgtgaatatggaagtaagcttatggcaatgtt |
17688318 |
T |
|
| Q |
108 |
ggattggttcctcatgtgcaacttcggatttcttttcaccaaataaatgataactatatagcataaacacaaaaaatgaagaacagatttagtgagacac |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
17688319 |
ggattggttcctcatgtgcaacttcggatttctttacaccaaataaatgataactatatagcagaaacacaaaaaatgaagaacagatttagtgagacac |
17688418 |
T |
|
| Q |
208 |
taaattagttgttatcagcgaggcactgctactctttcattcagcatggagaacaaa-ttaggtcttttttagtcattatcaatgagaattgcataattc |
306 |
Q |
| |
|
|| |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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|
| T |
17688419 |
tacattagttgttattagtgaggcactgctactctttcattcagcatggagaacaaatttagtccttttttagtcattatc------------------- |
17688499 |
T |
|
| Q |
307 |
tcatttaaagccaatg-ttttttgtttgttatcattgcttgattag-ttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttgaaa |
404 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
17688500 |
-catttaaagccaatgtttttttgtttgttatcattgcttgattagtttatccaattgaatgttgtgttgtcgtcttggttatattacttagatttgaaa |
17688598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 31686553 - 31686641
Alignment:
| Q |
324 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttgaaactggaatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||||||||||||| |||||| |
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|
| T |
31686553 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgggctgttgtcatggttatattacttagatttgaaaccggaatg |
31686641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 324 - 401
Target Start/End: Complemental strand, 48848458 - 48848381
Alignment:
| Q |
324 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttg |
401 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
48848458 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatattacttagatttg |
48848381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 324 - 401
Target Start/End: Original strand, 1263525 - 1263602
Alignment:
| Q |
324 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgtcgtcttggttatataacttagatttg |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
1263525 |
tttttgtttgttatcattgcttgattagttatccaattgaatgttgtgttgttgtcttggttatattacttagatttg |
1263602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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