View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12605_low_5 (Length: 396)
Name: NF12605_low_5
Description: NF12605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12605_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 51953076 - 51952695
Alignment:
| Q |
1 |
aagaacaacgtcggtaatcctatggttccccttgagagtagcagaacaattttgagcagcaccgagtctatgacttctgaactcctcccaagtccaatca |
100 |
Q |
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| T |
51953076 |
aagaacaacatcggtaatcctatggttccccttgagagtagcagaacaattttgagcagcaccgagtctatgacttctgaactcctcccaagtccaatca |
51952977 |
T |
|
| Q |
101 |
gcaaaatctgcaactccaaaattatttacaatcagaatttgactaagaaatgaaaaaagaaattaaagtcaaaggcaaatcaaaagcacatacgattaac |
200 |
Q |
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| T |
51952976 |
gcaaaatctgcaactccaaaattatttacaatcagaatttgactaagaaatgaaaaaagaaattaaagtcaaaggcaaatcaaaagcacatacgattaac |
51952877 |
T |
|
| Q |
201 |
accgagagtataaccgagtcgtttcttattagtagatttgataagttgaagattttcagagaagatcttaaatctacgcttcatttcatcaacggtatcg |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51952876 |
accgagagtataaccgaggcgtttcttattagtagatttgataagttgaagattttcagagaagatcttaaatctacgcttcatttcatcaacggtatcg |
51952777 |
T |
|
| Q |
301 |
tatcttttgccgtatctgttagcaaaacgagcgaaagagacagcgtggcgagattctccgatgacctgaagaagctgctcct |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51952776 |
tatcttttgccgtatctgttagcaaaacgagcgaaagagacagcgtggcgagattctccgatgacctgaagaagctgctcct |
51952695 |
T |
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