View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12606_high_5 (Length: 325)
Name: NF12606_high_5
Description: NF12606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12606_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 52389003 - 52389303
Alignment:
| Q |
1 |
cacctaagtatctttatttagctcgttgttcaatagaacttaacatagtttgaaaagcatgaatgactttggcctagtaaaacaacatgaaaattattgt |
100 |
Q |
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| T |
52389003 |
cacctaattatctttatgtagctcgttgttcaatagaacttaacatagtttgaaaagcatgaatgactttggcctagtaaaacaacatgaaaattattgt |
52389102 |
T |
|
| Q |
101 |
agctagctaaagtggtcctacaatcttcaatgacagaaccatattcagatctacaaattttatacttgtagatttgcaattaaggtaaaaaatgatgttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52389103 |
agctagctaaagtggtcctacaatcttcaatgacagaaccatattcaaatctacaaattttatacttgtagatttgcaattaaggtaaaaaatgatgctt |
52389202 |
T |
|
| Q |
201 |
ctaagattataggctataatcaaatgtagagctgccaataggcaaataatgccttgtacttttctaggaaccttgactgagaaggaaagaccaaggacca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
52389203 |
ctaagattataggctataatcaaatgtagagctgccaataggcaaataatgccttgtacttttctaggaacgttgactgagaaggaaaaaccaaggacca |
52389302 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| T |
52389303 |
t |
52389303 |
T |
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