View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12606_low_1 (Length: 607)
Name: NF12606_low_1
Description: NF12606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12606_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 44432681 - 44432248
Alignment:
| Q |
1 |
cacaaaaaatcagataagcatgtttctggccattaaatctgacatcaattaagtttctcatttcccaggtaaaaattgtctaacataaaaatactcaacc |
100 |
Q |
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| T |
44432681 |
cacaaaaaatcagataagcatgtttctggccattaaatctgacatcaattaagtttctcatttcccaggtaaaaattgtctgacataaaaatactcaacc |
44432582 |
T |
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| Q |
101 |
ataaccatatattgaaatgctcaaactcaattgtatttcatgtgtccacactaaaaataaaaacaataaagaatatatctagaatgtgccagtttctatt |
200 |
Q |
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| T |
44432581 |
ata------tattgaaatgctcaaactcaattgtatttcatgtgtccacactaaaaataaaaacaat------------------gtgccagtttctatt |
44432506 |
T |
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| Q |
201 |
catattatatattcttctgtcaatactcatataggtagagaatttagtatatactcttcacaaccatgcttccaacaattataatcacaacttttttcag |
300 |
Q |
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| T |
44432505 |
catattatatattcttctgtcaatactcatataggtagagaatttagtatatactcttcacaaccaagcttccaacaattataatcacaacttttttcag |
44432406 |
T |
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| Q |
301 |
cagaatatattccatgtggaatctaaccagaaagaacctcaatacttaaaacattcaacataaggaatacccctaatatagttcatattctttcccataa |
400 |
Q |
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| T |
44432405 |
cagaatatattccatgtggaatctaaccagaaataacttcaatacttaaaacattcaacataaggaatacccctaatatagttcatattctttcccataa |
44432306 |
T |
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| Q |
401 |
agtttcagctttcatatacggaattgtgtacttaaaccgaagaatgaaacataacacaa |
459 |
Q |
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| T |
44432305 |
agtttcagctttcatatacgg-attgtgtacttaaaccgaagaatgaaacataacacaa |
44432248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 555 - 589
Target Start/End: Complemental strand, 44432151 - 44432117
Alignment:
| Q |
555 |
taactaatggttatgacttatgatgatgtttgcat |
589 |
Q |
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| T |
44432151 |
taactaatggttatgacttatgatgatgtttgcat |
44432117 |
T |
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