View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12606_low_2 (Length: 369)
Name: NF12606_low_2
Description: NF12606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12606_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 351
Target Start/End: Original strand, 39300293 - 39300618
Alignment:
| Q |
19 |
actctgtctttttcaacatgaatatctctctcgtttgtggtgttttctctgcgagacaattgttcagatgccattttgtgtgtttnnnnnnngaacaaga |
118 |
Q |
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| T |
39300293 |
actctgtctttttcaacatgaatatctctctcgtttgtggtgttttctctgcgagacaattgttcagatgccattttgtgtgtgttt------aacaaga |
39300386 |
T |
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| Q |
119 |
acaaaagggtgttacgtacggttttgcttttgattgnnnnnnnnnnnnnnggtagtttaagatgcttgaactttgttgaagtacttgtgatgttttttgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300387 |
acaaaagggtgttacgtacggttttgcttttgattgttttttttttttttg-tagtttaagatgcttgaactttgttgaagtacttgtgatgttttttgt |
39300485 |
T |
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| Q |
219 |
atgtgtgcatggaaatgttgtgtgatttaaaaggagaaaggtattggcggtttgaagaggtttgtggtggatatgttttgcatggagtatgacatgtgga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300486 |
atgtgtgcatggaaatgttgtgtgatttaaaaggagaaaggtattggcggtttgaagaggtttgtggtggatatgttttgcatggagtatgacatgtgga |
39300585 |
T |
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| Q |
319 |
ataagaaacagtgattaatgacacgtgtgaatg |
351 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
39300586 |
ataagaaacagtgattaataacacgtgtgaatg |
39300618 |
T |
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