View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12606_low_4 (Length: 364)

Name: NF12606_low_4
Description: NF12606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12606_low_4
NF12606_low_4
[»] chr7 (21 HSPs)
chr7 (6-189)||(2733411-2733594)
chr7 (6-189)||(16718152-16718335)
chr7 (6-189)||(17692362-17692545)
chr7 (6-202)||(15236724-15236920)
chr7 (6-189)||(34406122-34406305)
chr7 (116-189)||(2734132-2734205)
chr7 (113-189)||(2733673-2733749)
chr7 (113-189)||(2734266-2734342)
chr7 (113-189)||(15236573-15236649)
chr7 (113-189)||(34406800-34406876)
chr7 (126-189)||(15236424-15236487)
chr7 (129-189)||(16717997-16718057)
chr7 (129-189)||(17692207-17692267)
chr7 (113-189)||(34406488-34406562)
chr7 (141-189)||(2733863-2733911)
chr7 (113-189)||(2733972-2734041)
chr7 (143-189)||(36157961-36158007)
chr7 (115-162)||(16717804-16717851)
chr7 (115-162)||(17692014-17692061)
chr7 (128-189)||(34406656-34406721)
chr7 (126-158)||(15236300-15236332)
[»] scaffold0246 (2 HSPs)
scaffold0246 (6-191)||(9436-9621)
scaffold0246 (114-189)||(9700-9775)
[»] chr5 (20 HSPs)
chr5 (6-202)||(17547212-17547408)
chr5 (6-189)||(32719330-32719513)
chr5 (6-189)||(41041573-41041756)
chr5 (6-189)||(17414130-17414313)
chr5 (113-189)||(38096734-38096810)
chr5 (113-189)||(17547483-17547559)
chr5 (113-189)||(41041844-41041920)
chr5 (126-189)||(17547646-17547709)
chr5 (113-189)||(35393547-35393623)
chr5 (113-189)||(41042015-41042098)
chr5 (125-189)||(35393413-35393477)
chr5 (125-189)||(35394038-35394102)
chr5 (143-189)||(38096618-38096664)
chr5 (144-189)||(38096904-38096949)
chr5 (115-189)||(35394182-35394261)
chr5 (113-158)||(32719197-32719242)
chr5 (126-158)||(17547801-17547833)
chr5 (113-158)||(38097079-38097124)
chr5 (113-153)||(35393702-35393742)
chr5 (130-158)||(41042194-41042222)
[»] chr8 (5 HSPs)
chr8 (6-189)||(16913779-16913962)
chr8 (6-185)||(41843623-41843802)
chr8 (113-189)||(41843894-41843970)
chr8 (129-189)||(41844109-41844169)
chr8 (113-158)||(14994092-14994137)
[»] chr3 (20 HSPs)
chr3 (6-189)||(49067710-49067893)
chr3 (6-189)||(55369825-55370008)
chr3 (6-189)||(40822886-40823070)
chr3 (6-189)||(53926921-53927104)
chr3 (6-151)||(48313932-48314077)
chr3 (113-189)||(36946499-36946575)
chr3 (113-189)||(55369662-55369738)
chr3 (116-189)||(53927341-53927414)
chr3 (113-189)||(53927595-53927671)
chr3 (111-189)||(40822722-40822800)
chr3 (127-189)||(53927197-53927259)
chr3 (113-189)||(36946656-36946732)
chr3 (129-189)||(40822567-40822627)
chr3 (262-346)||(5836110-5836194)
chr3 (262-346)||(5939501-5939585)
chr3 (113-189)||(40822259-40822340)
chr3 (261-346)||(2746239-2746324)
chr3 (144-189)||(40822419-40822464)
chr3 (113-151)||(40822142-40822180)
chr3 (113-151)||(49067981-49068019)
[»] chr2 (13 HSPs)
chr2 (6-189)||(39087429-39087612)
chr2 (113-202)||(38328652-38328741)
chr2 (113-189)||(38328211-38328287)
chr2 (259-346)||(20112398-20112485)
chr2 (113-189)||(38328510-38328586)
chr2 (113-189)||(38328820-38328896)
chr2 (113-189)||(39087853-39087927)
chr2 (137-189)||(38329073-38329125)
chr2 (113-189)||(39087691-39087774)
chr2 (113-189)||(38328028-38328097)
chr2 (113-158)||(38327904-38327949)
chr2 (113-151)||(38328965-38329003)
chr2 (258-303)||(3811506-3811551)
[»] chr4 (8 HSPs)
chr4 (6-189)||(11654203-11654386)
chr4 (113-189)||(11654518-11654594)
chr4 (113-189)||(54242899-54242975)
chr4 (263-346)||(1506830-1506913)
chr4 (150-189)||(54243054-54243093)
chr4 (126-158)||(49752305-49752337)
chr4 (129-189)||(11659188-11659250)
chr4 (126-158)||(49752423-49752455)
[»] chr6 (12 HSPs)
chr6 (16-189)||(26899465-26899638)
chr6 (113-189)||(26899717-26899793)
chr6 (113-189)||(26899863-26899939)
chr6 (126-189)||(21855330-21855393)
chr6 (128-189)||(21854845-21854906)
chr6 (258-346)||(5130298-5130386)
chr6 (142-189)||(21854705-21854752)
chr6 (265-346)||(26619708-26619789)
chr6 (265-346)||(26725621-26725702)
chr6 (143-189)||(21855022-21855068)
chr6 (143-189)||(21855193-21855239)
chr6 (153-189)||(26899957-26899993)
[»] scaffold0090 (6 HSPs)
scaffold0090 (6-186)||(13218-13398)
scaffold0090 (113-189)||(13790-13866)
scaffold0090 (113-189)||(13944-14020)
scaffold0090 (113-189)||(14099-14175)
scaffold0090 (127-189)||(13494-13563)
scaffold0090 (113-189)||(13642-13711)
[»] chr1 (2 HSPs)
chr1 (16-151)||(52408510-52408641)
chr1 (261-346)||(9392540-9392625)
[»] scaffold0043 (1 HSPs)
scaffold0043 (261-346)||(69194-69279)
[»] scaffold0891 (2 HSPs)
scaffold0891 (143-189)||(2007-2053)
scaffold0891 (140-189)||(1843-1892)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 2733411 - 2733594
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |||| |||||    
T  2733411 aggagcaaagaaacaaaataggaggaaactgttataggatggactccgtttagtgaaaacaaagtagcaacgatgagttgaaaataggagcaacgattat 2733510  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2733511 aggatgaagcagttagcgtccgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 2733594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 16718335 - 16718152
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||    
T  16718335 aggagcaaggaaacaaaataggaggaaactgttataggatggactccgtttagtaacaacaaagtagcaacgatgagttgaaaataggaacaacgattat 16718236  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16718235 aggatgaaacagttagcgtccgggttaactttaataaataagagataagagatttctccgtttgaaaataagattttgattaaa 16718152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 17692545 - 17692362
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| |||||    
T  17692545 aggagcaaggaaacaaaataggaggaaactgttataggatggactccgtttagtaacaacaaagtagcaacgatgagttgaaaataggaacaacgattat 17692446  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17692445 aggatgaaacagttagcgtccgggttaactttaataaataagagataagagatttctccgtttgaaaataagattttgattaaa 17692362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 15236920 - 15236724
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||    
T  15236920 aggagcagggaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaacaaagtagcaacgatgagttgaaaataggagcaacgattat 15236821  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaaagaagttaattaa 202  Q
    ||||||||||||||| ||| ||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||    
T  15236820 aggatgaaacagttagcgtccggattaactttaataaatatgagataagagatctatccgtttgaaaataagattttgattaaatgaattaaattaa 15236724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 34406122 - 34406305
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| || |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||  ||||    
T  34406122 aggagcagggagacaaaataggaggaaattgttataggatggactccgtttagtaaaaacaaagtagcaacgatgagttgaaaataggagcaacggttat 34406221  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||| | | ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  34406222 aggatgaaacagttagcttccgggttaactttaataaataagatataagacatctctccgtttgaaaataagattttgattaaa 34406305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 2734132 - 2734205
Alignment:
Q  116 agttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2734132 agttaacgtccgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 2734205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 2733673 - 2733749
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2733673 aacagttaacgtccgggttaactttaataaataagagatatgagatctctccgtttgaaaataagattttgattaaa 2733749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 2734266 - 2734342
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2734266 aacagttagcgtccgggttaactttaataaataagagataagagatatctccgtttgaaaataagattttgattaaa 2734342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 15236649 - 15236573
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15236649 aacagttaacgtccgggttaactttaataaataagagataagatatctctccgtttgaaaataagattttgattaaa 15236573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 34406800 - 34406876
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34406800 aacagttaacgtccgagttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 34406876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 126 - 189
Target Start/End: Complemental strand, 15236487 - 15236424
Alignment:
Q  126 cgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15236487 cgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 15236424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 16718057 - 16717997
Alignment:
Q  129 gttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16718057 gttaactttaataaataagagataagagatctctccgttttaaaataagattttgattaaa 16717997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 17692267 - 17692207
Alignment:
Q  129 gttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  17692267 gttaactgtaataaataagagataagagatctctccgttttaaaataagattttgattaaa 17692207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 34406488 - 34406562
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| ||||||||||||||| |||||||||||  |||| ||||||||||||||||||||||||||||||    
T  34406488 aacagttaacgttcgggttaactttaattaataagagata--agatatctccgtttgaaaataagattttgattaaa 34406562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 2733863 - 2733911
Alignment:
Q  141 aaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2733863 aaataagagataagagatctctccgtttaaaaataagattttgattaaa 2733911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 2733972 - 2734041
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  2733972 aacagttagcgtccgggttaactttaataaataagagata-------tctccgtttgaaaataagattttgattaaa 2734041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 36158007 - 36157961
Alignment:
Q  143 ataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  36158007 ataagagataaaagatatctccgtttgaaaataagattttgattaaa 36157961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 16717851 - 16717804
Alignment:
Q  115 cagttatcgtacgggttaactttaataaataagagataagagatctct 162  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  16717851 cagttagcgtccgggtcaactttaataaataagagataagagatctct 16717804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 17692061 - 17692014
Alignment:
Q  115 cagttatcgtacgggttaactttaataaataagagataagagatctct 162  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  17692061 cagttagcgtccgggtcaactttaataaataagagataagagatctct 17692014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 34406656 - 34406721
Alignment:
Q  128 ggttaactttaataaataaga-----gataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||||     ||||||||||||||||||||||| ||||| |||||||||||    
T  34406656 ggttaactttaataaataagagaagagataagagatctctccgtttgaacataag-ttttgattaaa 34406721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 15236332 - 15236300
Alignment:
Q  126 cgggttaactttaataaataagagataagagat 158  Q
    |||||||||||||||||||||||||||||||||    
T  15236332 cgggttaactttaataaataagagataagagat 15236300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 9436 - 9621
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||    
T  9436 aggagcagggaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaacaaagtagcaacgatgagttgaaaataggagcaacgattat 9535  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaaag 191  Q
    ||||||||||||||| | | ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  9536 aggatgaaacagttagcatccgggttaactttaataaataagatataagagatctctccgtttaaaaataagattttgattaaaag 9621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 114 - 189
Target Start/End: Original strand, 9700 - 9775
Alignment:
Q  114 acagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  9700 acagttaacgtccgggttaactttaataaataagagataaaagatctctccgtttgaaaatcagattttgattaaa 9775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 6 - 202
Target Start/End: Original strand, 17547212 - 17547408
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||    
T  17547212 aggagcagggaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaacaaagtagcaacgatgagttgaaaataggagcaacgattat 17547311  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaaagaagttaattaa 202  Q
    ||||||||||||||| ||| ||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| ||| | ||||||    
T  17547312 aggatgaaacagttagcgtccggattaactttaataaatatgagataagagatctatccgtttgaaaataagattttgattaaatgaattaaattaa 17547408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 32719513 - 32719330
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||    
T  32719513 aggagcagggaaacaaaataggaggaaactgttacaggatggactccgtttagtaaaaacaaagtagcaacgatgagttgaaaataggagcaacgattat 32719414  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||  || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32719413 aggatgaaacagttagtgttcggattaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 32719330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 41041573 - 41041756
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||| |||||    
T  41041573 aggagcagggaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaacaaagtagcaacgatgagttgaaaataagaacaacgattat 41041672  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||| |||| | || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41041673 aggatgaaacaggtatcatccgcgttaactttattaaataagagataagagatctctccgtttgaaaataagattttgattaaa 41041756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 17414130 - 17414313
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||| |||||    
T  17414130 aggagcagggaaacaaaataggaggaaactgttatatgatggactccttttagtaaaaacaaagtagcaccaatgagttgaaaataggagcaacgattat 17414229  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  17414230 aggatcaaacagttagcgtccaggttaactttaataaataagagataagagatctctccatttgaaaataagattttgattaaa 17414313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 38096734 - 38096810
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38096734 aacagttaacgtccgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 38096810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 17547483 - 17547559
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  17547483 aacagttaacgtccgggttaactttaataaataagagataagatatctctccgtttgaaaataagattttgattaaa 17547559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 41041844 - 41041920
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41041844 aacagttaacgtccgggttaactttaataaataagagataaaagatctctccgtttgaaaataagattttgattaaa 41041920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 17547646 - 17547709
Alignment:
Q  126 cgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17547646 cgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 17547709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 35393547 - 35393623
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  35393547 aacagttagcgtccgggttaactttaataaataagagataagatatctctctgtttgaaaataagattttgattaaa 35393623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 41042015 - 41042098
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataa-------gagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  41042015 aacagttaacgtccgggttaactttaataaataagagataagagataagagatctctccgtttgaaaataagattttgattaaa 41042098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 35393413 - 35393477
Alignment:
Q  125 acgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||||    
T  35393413 acgggttaacttttagaaataagaaataagatatctctccgtttgaaaataagattttgattaaa 35393477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 35394038 - 35394102
Alignment:
Q  125 acgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||| | ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  35394038 acgggttaacttttagaaataagagataagagatctcttagtttgaaaataagattttgattaaa 35394102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 38096618 - 38096664
Alignment:
Q  143 ataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  38096618 ataagagataagagatctctccgtttgaaaataagattttgattaaa 38096664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 38096904 - 38096949
Alignment:
Q  144 taagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38096904 taagagataagagatctctccgtttgaaaataagattttgattaaa 38096949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 35394182 - 35394261
Alignment:
Q  115 cagttatcgtacgggttaactttaataaataagagataagagat-----ctctccgtttgaaaataagattttgattaaa 189  Q
    |||||| ||| |||||||||||||||||||||||||||||||||      |||| ||||||||||||||||||| |||||    
T  35394182 cagttagcgttcgggttaactttaataaataagagataagagataagagatctctgtttgaaaataagattttgtttaaa 35394261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 32719242 - 32719197
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagat 158  Q
    |||||||| ||| ||||||||||||||| |||||||||||||||||    
T  32719242 aacagttaacgtccgggttaactttaattaataagagataagagat 32719197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 17547801 - 17547833
Alignment:
Q  126 cgggttaactttaataaataagagataagagat 158  Q
    |||||||||||||||||||||||||||||||||    
T  17547801 cgggttaactttaataaataagagataagagat 17547833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 38097079 - 38097124
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagat 158  Q
    |||||||| ||| ||  |||||||||||||||||||||||||||||    
T  38097079 aacagttagcgtccgatttaactttaataaataagagataagagat 38097124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 35393702 - 35393742
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataa 153  Q
    |||||||| ||| |||||||| |||||||||||||||||||    
T  35393702 aacagttagcgtccgggttaaatttaataaataagagataa 35393742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 41042194 - 41042222
Alignment:
Q  130 ttaactttaataaataagagataagagat 158  Q
    |||||||||||||||||||||||||||||    
T  41042194 ttaactttaataaataagagataagagat 41042222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 1e-75; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 16913779 - 16913962
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||    
T  16913779 aggagcatggaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaacaaagtagcaacgatgagttgaaaataggagcaacgattat 16913878  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||| ||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16913879 aggatgaaatagttagcgtctgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 16913962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 185
Target Start/End: Original strand, 41843623 - 41843802
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  41843623 aggagcagggaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaacaaagtagcaacaatgagttgaaaataggagcaacgattat 41843722  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgat 185  Q
    ||||||||||||||| |||  |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  41843723 aggatgaaacagttaccgtcggggttaactttaataaataagagataagagatctttctgtttgaaaataagattttgat 41843802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 41843894 - 41843970
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  41843894 aacagttagcgtccgggttaattttaataaataagagataagagatctttctgtttgaaaataagattttgattaaa 41843970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 41844109 - 41844169
Alignment:
Q  129 gttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  41844109 gttaactttaataaataagagataagagatatctccgtttgaaaataagattttaattaaa 41844169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 14994092 - 14994137
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagat 158  Q
    |||||||||||| | ||||||||||||||||| |||||||||||||    
T  14994092 aacagttatcgttcaggttaactttaataaatcagagataagagat 14994137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 49067710 - 49067893
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||    
T  49067710 aggagcagggaaacaaaataggaggaaactgttaaaggatggactccgtttagtaaaaacaaagtagcaacgatgagttgaaaataggagcaacgattat 49067809  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  49067810 aggatgaaacagttagcgtccgggttaactttaataaataagagataagagatctcttcgtttgaaaataaaattttgattaaa 49067893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 55370008 - 55369825
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||  ||||||||||||||||| |||| |||||    
T  55370008 aggagcagggaaacaaaataggaggaaactgttataggatggactccatttagtaaaaacaaagtagcaatgatgagttgaaaataggagcaacgattat 55369909  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  55369908 aggatgaaacagttagcgtccgggttaactttaataaataagagataagatatctctccgtttgaaaataagattttgattaaa 55369825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 40823070 - 40822886
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| |||||||||||  |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||    
T  40823070 aggagcagggaaacaaaataataggaaattgttataggatggactccgtttagtaaaaacaaagtagcaacaatgagttgaaaataggagcaacgattat 40822971  T
Q  106 aggatgaaacagttatcgtac-gggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||| ||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40822970 aggatgaaatagttagcgtccggggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 40822886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 53926921 - 53927104
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||| |||| |||||    
T  53926921 aggagcagggaaacaaaagaggaggaaattgttataggatggactccgtttagtaaaaacaaagtaggaacgatgagttgaaagtaggagcaacgattat 53927020  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    | ||||||||||||| | | ||||||||||||||||||||  |||| ||||||||||| |||||||||||| ||||||||||||    
T  53927021 aagatgaaacagttagcatccgggttaactttaataaatattagattagagatctctctgtttgaaaataaaattttgattaaa 53927104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 6 - 151
Target Start/End: Complemental strand, 48314077 - 48313932
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||| |||||    
T  48314077 aggagcaaggaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaacaaagtagaaacgatgagttgaaaataggagcaacgattat 48313978  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagat 151  Q
    ||||||||||||| | ||| ||||||||||||||||||||||||||    
T  48313977 aggatgaaacagtcagcgttcgggttaactttaataaataagagat 48313932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 36946499 - 36946575
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36946499 aacagttagcgtccgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 36946575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 55369738 - 55369662
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55369738 aacagttagcgtccggattaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 55369662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 189
Target Start/End: Original strand, 53927341 - 53927414
Alignment:
Q  116 agttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53927341 agttaacgtccgggttaactttaataaataagagataagagatctctccgtttgaaaataagtttttgattaaa 53927414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 53927595 - 53927671
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53927595 aacagttagcgtccgggttaactgtaataaataagatataagagatctctccgtttgaaaataagattttgattaaa 53927671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 111 - 189
Target Start/End: Complemental strand, 40822800 - 40822722
Alignment:
Q  111 gaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||| |||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  40822800 gaaacagttaacgtctgggttaactttaataaataaaagataagagatctctccatttgaaaataagattttgattaaa 40822722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 53927197 - 53927259
Alignment:
Q  127 gggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53927197 gggttaactttaaaaaataagagataagagatctctccgtttgaaaataagattttgattaaa 53927259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 36946656 - 36946732
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  36946656 aacagttagcgtccgggttaattttaataaataagaggtaagagatctctcagtttgaaaataagattttgattaaa 36946732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 40822627 - 40822567
Alignment:
Q  129 gttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40822627 gttaactttaataaataagagataagagatctctgcgtttgaaaataagattttgattaaa 40822567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 5836194 - 5836110
Alignment:
Q  262 ggatttttccgaaataagctaaaacgtgagtttaagttggttgaatggttccagaacttaatatgtatgtttaatgggctgaata 346  Q
    ||||||||| | ||||||||||||||||| ||||| |||  |||||||||||||||||||||||||||||| || ||||||||||    
T  5836194 ggatttttctgtaataagctaaaacgtgaatttaaattgtgtgaatggttccagaacttaatatgtatgttcaaagggctgaata 5836110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 262 - 346
Target Start/End: Complemental strand, 5939585 - 5939501
Alignment:
Q  262 ggatttttccgaaataagctaaaacgtgagtttaagttggttgaatggttccagaacttaatatgtatgtttaatgggctgaata 346  Q
    ||||||||||||||||||||||||||||| ||||| |||  ||||| ||||||||||||||||||||||||  | ||||||||||    
T  5939585 ggatttttccgaaataagctaaaacgtgaatttaaattgtgtgaatagttccagaacttaatatgtatgttcgaagggctgaata 5939501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 40822340 - 40822259
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagaga-----taagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||| ||||||    
T  40822340 aacagttaacgtccgggttaactttaataaataagagaagagataagagatctctccgtttgaaaataagattttaattaaa 40822259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 2746239 - 2746324
Alignment:
Q  261 tggatttttccgaaataagctaaaacgtgagtttaagttggttgaatggttccagaacttaatatgtatgtttaatgggctgaata 346  Q
    ||||||| |||||||||||||||||||||| ||||| ||||  |||||||||| ||||||||||| |||||| || ||| ||||||    
T  2746239 tggatttgtccgaaataagctaaaacgtgaatttaaattgggggaatggttccggaacttaatatatatgttcaaagggttgaata 2746324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 189
Target Start/End: Complemental strand, 40822464 - 40822419
Alignment:
Q  144 taagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  40822464 taagaaataagagatctcttcgtttgaaaataagattttgattaaa 40822419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 40822180 - 40822142
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagat 151  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  40822180 aacagttagcgtccgggttaactttaataaataagagat 40822142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 151
Target Start/End: Original strand, 49067981 - 49068019
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagat 151  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  49067981 aacagttaacgtccgggttaactttaataaataagagat 49068019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 140; Significance: 3e-73; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 39087429 - 39087612
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||  |||||    
T  39087429 aggagcagggaaacaaaataggaagaaactgttataggatagactccgtttagtaaaaacaaagtagcaacgatgagttgaaaataggagcaatgattat 39087528  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39087529 aggatgtaacagttagcgtccgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 39087612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 38328741 - 38328652
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaaagaagttaattaa 202  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  || ||||||||    
T  38328741 aacagttaacgtccgggttaactttaataaataagagataagagatctctccatttgaaaataagattttgattaaattaacttaattaa 38328652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 38328287 - 38328211
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38328287 aacagttaacgtccgggttaactttaacaaataagagataagagatctctccgtttgaaaataagattttgattaaa 38328211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 259 - 346
Target Start/End: Complemental strand, 20112485 - 20112398
Alignment:
Q  259 catggatttttccgaaataagctaaaacgtgagtttaagttggttgaatggttccagaacttaatatgtatgtttaatgggctgaata 346  Q
    |||||||||||||| |||||||||||| ||||||||||| |  |||||||||||||||||||||||||||||||| ||||||||||||    
T  20112485 catggatttttccggaataagctaaaaagtgagtttaagattattgaatggttccagaacttaatatgtatgttttatgggctgaata 20112398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 38328586 - 38328510
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||    
T  38328586 aacagttaacgtccgggttaactttaataaaagagagataagagatctctccgtttgaaaataagattttggttaaa 38328510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 38328896 - 38328820
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| ||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||    
T  38328896 aacagttaacgtccgggttaactttaataaataagatatatgagatctctccgtttaaaaataagattttgattaaa 38328820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 39087853 - 39087927
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||  || |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  39087853 aacagttaatgtccgggttaactttaataaataaga--taagagatctctccgtttgaaaataagattttgattaaa 39087927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 38329125 - 38329073
Alignment:
Q  137 taataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38329125 taataaataagagataagagatctctccgtttgaaaataagattttgattaaa 38329073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 39087691 - 39087774
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataa-------gagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  39087691 aacagttaacgttcgggttaactttaataaataagagataagagataagagatctctccgtttgaaaataagattttgattaaa 39087774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 38328097 - 38328028
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  38328097 aacagttagcgtccgggttaactttaataaataagagat-------ctctccgtttgaaaataagattttgattaaa 38328028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 38327949 - 38327904
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagat 158  Q
    |||| ||| ||| |||||||||||||||||||||||||||||||||    
T  38327949 aacaattaacgtccgggttaactttaataaataagagataagagat 38327904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 38329003 - 38328965
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagat 151  Q
    |||||||| ||| ||||||||||||||||||||||||||    
T  38329003 aacagttaacgtccgggttaactttaataaataagagat 38328965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 3811506 - 3811551
Alignment:
Q  258 acatggatttttccgaaataagctaaaacgtgagtttaagttggtt 303  Q
    ||||||| |||| ||||||||||||||||| || ||||||||||||    
T  3811506 acatggactttttcgaaataagctaaaacgagattttaagttggtt 3811551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 7e-71; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 6 - 189
Target Start/End: Original strand, 11654203 - 11654386
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| |||| |||||    
T  11654203 aggagcagggaaacaaaataggaggaaattgttataggatggactccgtttagtaaaaacaaagtagcaacgatgagttaaaaataggagcaacgattat 11654302  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  11654303 aggatgaaacagttagcatccgggttaactttaataaataagagataagagatctctccgtttgaaaataaaattgtgattaaa 11654386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 11654518 - 11654594
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| | | ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  11654518 aacagttaacatccgggttaactttaataaataatagataaaagatctctccgtttgaaaataagattttgattaaa 11654594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 113 - 189
Target Start/End: Complemental strand, 54242975 - 54242899
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  54242975 aacagttagcgtctgggttaactttaataaataagagataagagatctttccatttgaaaataagattttgattaaa 54242899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 1506913 - 1506830
Alignment:
Q  263 gatttttccgaaataagctaaaacgtgagtttaagttggttgaatggttccagaacttaatatgtatgtttaatgggctgaata 346  Q
    |||||||| ||||||||||||||||||| | |||||||| ||||||  |||||||||||||||||||||| || ||||||||||    
T  1506913 gatttttctgaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacttaatatgtatgttcaaagggctgaata 1506830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 189
Target Start/End: Complemental strand, 54243093 - 54243054
Alignment:
Q  150 ataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  54243093 ataagagatctctccgttagaaaataagattttgattaaa 54243054  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 49752305 - 49752337
Alignment:
Q  126 cgggttaactttaataaataagagataagagat 158  Q
    |||||||||||||||||||||||||||||||||    
T  49752305 cgggttaactttaataaataagagataagagat 49752337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 189
Target Start/End: Original strand, 11659188 - 11659250
Alignment:
Q  129 gttaactttaataaataagag--ataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||| ||||||   | |||| |||||||||||||||||||| ||||||||||||    
T  11659188 gttaactttaatatataagaagaagaagatatctctccgtttgaaaataaaattttgattaaa 11659250  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 49752423 - 49752455
Alignment:
Q  126 cgggttaactttaataaataagagataagagat 158  Q
    |||||||||||||||||||||||||||| ||||    
T  49752423 cgggttaactttaataaataagagataaaagat 49752455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 7e-65; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 26899465 - 26899638
Alignment:
Q  16 aaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattataggatgaaac 115  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| |||| |||||||||||||||    
T  26899465 aaacaaaataggaggaaattgttataggatggactccgtttagtaaaaacaaagaagcaacgatgagttgaaaataggagcaacgattataggatgaaac 26899564  T
Q  116 agttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    | |||  || |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  26899565 aattagtgtccgggttaactttaataaataagagataagagatctctctgtttgaaaataagtttttgattaaa 26899638  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 26899717 - 26899793
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26899717 aacagttagcatccgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 26899793  T

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Target: chr6; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 26899863 - 26899939
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||| ||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26899863 aacacttaacgttcgggttaactttaataaataagatataagagatctctccgtttgaaaataagattttgattaaa 26899939  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 21855330 - 21855393
Alignment:
Q  126 cgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21855330 cgggttaactttaataaataagagataagagatatctccgtttgaaaataagattttgattaaa 21855393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 21854845 - 21854906
Alignment:
Q  128 ggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21854845 ggttaactttaataaataagagataagagatatctccgtttgaaaataagattttgattaaa 21854906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 346
Target Start/End: Original strand, 5130298 - 5130386
Alignment:
Q  258 acatggatttttccgaaataagctaaaacgtgagtttaagttggttgaatggttccagaacttaatatgtatgtttaatgggctgaata 346  Q
    |||| |||||||||||||||||||||||||||| | |||||||| ||||||  |||||||||||||||||||||| || ||||||||||    
T  5130298 acatagatttttccgaaataagctaaaacgtgaatctaagttgggtgaatgactccagaacttaatatgtatgttcaaagggctgaata 5130386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 21854705 - 21854752
Alignment:
Q  142 aataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  21854705 aataagagataagagatctctccgtttgaaaataagattttgattaaa 21854752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 26619708 - 26619789
Alignment:
Q  265 tttttccgaaataagctaaaacgtgagtttaagttggttgaatggttccagaacttaatatgtatgtttaatgggctgaata 346  Q
    |||||||||||||||||||| ||| | | |||||||| ||||||  |||||||||||||||||||||| || ||||||||||    
T  26619708 tttttccgaaataagctaaagcgttaatctaagttgggtgaatgactccagaacttaatatgtatgttcaaagggctgaata 26619789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 26725621 - 26725702
Alignment:
Q  265 tttttccgaaataagctaaaacgtgagtttaagttggttgaatggttccagaacttaatatgtatgtttaatgggctgaata 346  Q
    |||||||||||||||||||| ||| | | |||||||| ||||||  |||||||||||||||||||||| || ||||||||||    
T  26725621 tttttccgaaataagctaaagcgttaatctaagttgggtgaatgactccagaacttaatatgtatgttcaaagggctgaata 26725702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 21855022 - 21855068
Alignment:
Q  143 ataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  21855022 ataagagataagaaatctctccgtttgaaaataagattttgattaaa 21855068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 21855193 - 21855239
Alignment:
Q  143 ataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||    
T  21855193 ataagagataagagatctcttcgtttgaaaataagattttgattaaa 21855239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 26899957 - 26899993
Alignment:
Q  153 agagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||||| |||||||||||||||||||||||||    
T  26899957 agagatctctctgtttgaaaataagattttgattaaa 26899993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 125; Significance: 3e-64; HSPs: 6)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 6 - 186
Target Start/End: Original strand, 13218 - 13398
Alignment:
Q  6 aggagcagagaaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattat 105  Q
    |||||||  ||||||||||||||||||||||||||||||||||||| ||| | |||||| ||||||||||| ||||||||||||||||| |||| |||||    
T  13218 aggagcaaggaaacaaaataggaggaaactgttataggatggactcggttcaataaaaacaaagtagcaacgatgagttgaaaataggagcaacgattat 13317  T
Q  106 aggatgaaacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgatt 186  Q
    ||||||||||||||| |||  ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  13318 aggatgaaacagttagcgtctgggttaactttaataaataagagctaagagatctctctgtttgaaaataagattttgatt 13398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 13790 - 13866
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13790 aacagttagtgtccgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 13866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 13944 - 14020
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13944 aacagttagcgtctgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 14020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 14099 - 14175
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||| | ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14099 aacagtcagcgtccgggttatctttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 14175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 13494 - 13563
Alignment:
Q  127 gggttaactttaataaataagagataaga-------gatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  13494 gggttaactttaataaataagagataagagataagggatctctccgtttgaaaataagattttgattaaa 13563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 189
Target Start/End: Original strand, 13642 - 13711
Alignment:
Q  113 aacagttatcgtacgggttaactttaataaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||| ||| |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  13642 aacagttagcgtccgggttaactttaataaataa-------gagatctctccgtttgaaaataagattttgattaaa 13711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 52408510 - 52408641
Alignment:
Q  16 aaacaaaataggaggaaactgttataggatggactccgtttagtaaaaataaagtagcaacaatgagttgaaaataggaacaactattataggatgaaac 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  52408510 aaacaaaataggaggaaactgttataggatggactccgtttagtaaaaacaaagtagcaacgatgagttgaaaataggagcaacaattataggatgaaac 52408609  T
Q  116 agttatcgtacgggttaactttaataaataagagat 151  Q
    |||||    ||||||||| |||||||||||||||||    
T  52408610 agtta----acgggttaaatttaataaataagagat 52408641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 346
Target Start/End: Complemental strand, 9392625 - 9392540
Alignment:
Q  261 tggatttttccgaaataagctaaaacgtgagtttaagttggttgaatggttccagaacttaatatgtatgtttaatgggctgaata 346  Q
    ||||||||| |||||||||||||||||||| ||||| ||||  ||| ||||||||||||| ||||||||||| || ||||||||||    
T  9392625 tggattttttcgaaataagctaaaacgtgaatttaaattgggcgaaaggttccagaacttgatatgtatgttcaaagggctgaata 9392540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 261 - 346
Target Start/End: Original strand, 69194 - 69279
Alignment:
Q  261 tggatttttccgaaataagctaaaacgtgagtttaagttggttgaatggttccagaacttaatatgtatgtttaatgggctgaata 346  Q
    ||||||| |||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||| |||||| || ||| ||||||    
T  69194 tggatttgtccgaaataagctaaaacgtgaatttaaattgggggaatggttccagaacttaatatatatgttcaaagggttgaata 69279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: scaffold0891
Description:

Target: scaffold0891; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 2007 - 2053
Alignment:
Q  143 ataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2007 ataagagataagagatctctccgtttgaaaataagattttgattaaa 2053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0891; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 140 - 189
Target Start/End: Original strand, 1843 - 1892
Alignment:
Q  140 taaataagagataagagatctctccgtttgaaaataagattttgattaaa 189  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1843 taaataagagataagagatctctccgtttgtaaataagattttgattaaa 1892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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