View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12607_high_4 (Length: 319)

Name: NF12607_high_4
Description: NF12607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12607_high_4
NF12607_high_4
[»] chr3 (8 HSPs)
chr3 (1-303)||(34520990-34521292)
chr3 (110-303)||(27635304-27635497)
chr3 (28-116)||(27636212-27636300)
chr3 (1-33)||(12123084-12123116)
chr3 (1-30)||(4846956-4846985)
chr3 (1-33)||(8846436-8846468)
chr3 (1-33)||(9028185-9028217)
chr3 (1-33)||(45871691-45871723)
[»] chr1 (15 HSPs)
chr1 (1-33)||(16268049-16268081)
chr1 (1-30)||(10654027-10654056)
chr1 (1-30)||(34029081-34029110)
chr1 (1-29)||(9881550-9881578)
chr1 (1-29)||(14118528-14118556)
chr1 (1-29)||(18794053-18794081)
chr1 (1-33)||(19986482-19986514)
chr1 (1-29)||(23281370-23281398)
chr1 (1-29)||(25088014-25088042)
chr1 (1-29)||(28112719-28112747)
chr1 (1-33)||(30611214-30611246)
chr1 (1-29)||(33753223-33753251)
chr1 (1-29)||(34028719-34028747)
chr1 (1-29)||(36077269-36077297)
chr1 (1-29)||(45305769-45305797)
[»] chr5 (9 HSPs)
chr5 (1-32)||(7399072-7399103)
chr5 (1-30)||(5152613-5152642)
chr5 (1-30)||(36752261-36752290)
chr5 (1-33)||(3879372-3879404)
chr5 (1-33)||(12593450-12593482)
chr5 (1-29)||(18514286-18514314)
chr5 (1-29)||(19204942-19204970)
chr5 (1-33)||(33699269-33699301)
chr5 (1-29)||(35263492-35263520)
[»] chr7 (3 HSPs)
chr7 (1-31)||(43726602-43726632)
chr7 (1-29)||(32706730-32706758)
chr7 (1-29)||(35085737-35085765)
[»] chr8 (5 HSPs)
chr8 (1-30)||(7041984-7042013)
chr8 (1-30)||(30872780-30872809)
chr8 (1-30)||(35224127-35224156)
chr8 (1-29)||(11198565-11198593)
chr8 (1-29)||(24457012-24457040)
[»] chr4 (2 HSPs)
chr4 (1-30)||(9010502-9010531)
chr4 (1-33)||(32385171-32385203)
[»] chr2 (6 HSPs)
chr2 (1-30)||(17856549-17856578)
chr2 (1-30)||(39454448-39454477)
chr2 (1-33)||(12304514-12304546)
chr2 (1-33)||(31450660-31450692)
chr2 (1-33)||(39150185-39150217)
chr2 (1-29)||(39912988-39913016)
[»] scaffold0809 (1 HSPs)
scaffold0809 (1-29)||(4678-4706)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-29)||(11486-11514)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-29)||(177425-177453)
[»] chr6 (2 HSPs)
chr6 (1-29)||(33548125-33548153)
chr6 (1-29)||(33972535-33972563)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 34521292 - 34520990
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctattttcatcatgttatgatatggatattttcatggcaatattttaagttcttatgtgggtactattattaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34521292 ttaagggaccaaaaatgcaatttagcctattttcatcatgttatgatatggatattttcatggcaatattttaagttcttatgtgggtactattattaat 34521193  T
Q  101 tcaacataaacaaactctattcatcttttatgaagcaaatagcctacactattatttgctagacgaccaaacaatcaagtaaaatacacaattacaaagg 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34521192 tcaacataaacaaactctattcatctttaatgaagcaaatagcctacactattatttgctagacgaccaaacaatcaagtaaaatacacaattacaaagg 34521093  T
Q  201 tcaccagaagccaaacactttcaggaattccacatcaaaacccctttcaaataagaatagtgttgaacttactaagcactagttagcttttgcagcaagt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  34521092 tcaccagaagccaaacactttcaggaattccacatcaaaacccctttcaaataagaatagtgttgaacttactatgcactagttaacttttgcagcaagt 34520993  T
Q  301 taa 303  Q
    |||    
T  34520992 taa 34520990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 110 - 303
Target Start/End: Complemental strand, 27635497 - 27635304
Alignment:
Q  110 acaaactctattcatcttttatgaagcaaatagcctacactattatttgctagacgaccaaacaatcaagtaaaatacacaattacaaaggtcaccagaa 209  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27635497 acaaactctattcatcttttatgaagcaaatagcccacactattatttgctacacgaccaaacaatcaagtaaaatacacaattacaaaggtcaccagaa 27635398  T
Q  210 gccaaacactttcaggaattccacatcaaaacccctttcaaataagaatagtgttgaacttactaagcactagttagcttttgcagcaagttaa 303  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  27635397 gccaaacactttcaggaattccatatcaaaacccctttcaaataagaatagtgttgaacttactaagcactagttaacttgtgcagcaagttaa 27635304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 27636300 - 27636212
Alignment:
Q  28 tattttcatcatgttatgatatggatattttcatggcaatattttaagttcttatgtgggtactattattaattcaacataaacaaact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27636300 tattttcatcatgttatgatatggatattttcatggcaatattttaagttcttatgttggtactattattaattcaacataaacaaact 27636212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12123116 - 12123084
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    |||||||||||||||||||||||||||||||||    
T  12123116 ttaagggaccaaaaatgcaatttagcctatttt 12123084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4846956 - 4846985
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  4846956 ttaagggaccaaaaatgcaatttagcctat 4846985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8846436 - 8846468
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    ||||||||||||||||||||||||||| |||||    
T  8846436 ttaagggaccaaaaatgcaatttagccaatttt 8846468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9028217 - 9028185
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    ||||||||||||||||| |||||||||||||||    
T  9028217 ttaagggaccaaaaatgtaatttagcctatttt 9028185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45871723 - 45871691
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    |||||||||||||||||||||||||||| ||||    
T  45871723 ttaagggaccaaaaatgcaatttagcctttttt 45871691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 16268049 - 16268081
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    |||||||||||||||||||||||||||||||||    
T  16268049 ttaagggaccaaaaatgcaatttagcctatttt 16268081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10654056 - 10654027
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  10654056 ttaagggaccaaaaatgcaatttagcctat 10654027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 34029081 - 34029110
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  34029081 ttaagggaccaaaaatgcaatttagcctat 34029110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9881578 - 9881550
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  9881578 ttaagggaccaaaaatgcaatttagccta 9881550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14118556 - 14118528
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  14118556 ttaagggaccaaaaatgcaatttagccta 14118528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 18794053 - 18794081
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  18794053 ttaagggaccaaaaatgcaatttagccta 18794081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 19986482 - 19986514
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  19986482 ttaagggaccaaaaatgcaatttatcctatttt 19986514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 23281370 - 23281398
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  23281370 ttaagggaccaaaaatgcaatttagccta 23281398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 25088042 - 25088014
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  25088042 ttaagggaccaaaaatgcaatttagccta 25088014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 28112747 - 28112719
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  28112747 ttaagggaccaaaaatgcaatttagccta 28112719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30611246 - 30611214
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  30611246 ttaagggaccaaaaatgcaatttaacctatttt 30611214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33753251 - 33753223
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  33753251 ttaagggaccaaaaatgcaatttagccta 33753223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 34028747 - 34028719
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  34028747 ttaagggaccaaaaatgcaatttagccta 34028719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36077297 - 36077269
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  36077297 ttaagggaccaaaaatgcaatttagccta 36077269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 45305769 - 45305797
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  45305769 ttaagggaccaaaaatgcaatttagccta 45305797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7399103 - 7399072
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctattt 32  Q
    ||||||||||||||||||||||||||||||||    
T  7399103 ttaagggaccaaaaatgcaatttagcctattt 7399072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 5152642 - 5152613
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  5152642 ttaagggaccaaaaatgcaatttagcctat 5152613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 36752261 - 36752290
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  36752261 ttaagggaccaaaaatgcaatttagcctat 36752290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3879372 - 3879404
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    |||||||||||||||||||||||||||| ||||    
T  3879372 ttaagggaccaaaaatgcaatttagcctttttt 3879404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12593482 - 12593450
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    |||||||| ||||||||||||||||||||||||    
T  12593482 ttaagggatcaaaaatgcaatttagcctatttt 12593450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 18514314 - 18514286
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  18514314 ttaagggaccaaaaatgcaatttagccta 18514286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19204970 - 19204942
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  19204970 ttaagggaccaaaaatgcaatttagccta 19204942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33699301 - 33699269
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    ||||||||||| |||||||||||||||||||||    
T  33699301 ttaagggaccataaatgcaatttagcctatttt 33699269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35263520 - 35263492
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  35263520 ttaagggaccaaaaatgcaatttagccta 35263492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 43726602 - 43726632
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatt 31  Q
    |||||||||||||||||||||||||||||||    
T  43726602 ttaagggaccaaaaatgcaatttagcctatt 43726632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32706758 - 32706730
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  32706758 ttaagggaccaaaaatgcaatttagccta 32706730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 35085765 - 35085737
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  35085765 ttaagggaccaaaaatgcaatttagccta 35085737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7041984 - 7042013
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  7041984 ttaagggaccaaaaatgcaatttagcctat 7042013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 30872809 - 30872780
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  30872809 ttaagggaccaaaaatgcaatttagcctat 30872780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 35224127 - 35224156
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  35224127 ttaagggaccaaaaatgcaatttagcctat 35224156  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 11198565 - 11198593
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  11198565 ttaagggaccaaaaatgcaatttagccta 11198593  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 24457012 - 24457040
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  24457012 ttaagggaccaaaaatgcaatttagccta 24457040  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 9010531 - 9010502
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  9010531 ttaagggaccaaaaatgcaatttagcctat 9010502  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32385171 - 32385203
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  32385171 ttaagggaccaaaaatgcaatttaacctatttt 32385203  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 17856549 - 17856578
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  17856549 ttaagggaccaaaaatgcaatttagcctat 17856578  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 39454477 - 39454448
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctat 30  Q
    ||||||||||||||||||||||||||||||    
T  39454477 ttaagggaccaaaaatgcaatttagcctat 39454448  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12304514 - 12304546
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  12304514 ttaagggacaaaaaatgcaatttagcctatttt 12304546  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 31450692 - 31450660
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    |||||||||||||||||||||||||||| ||||    
T  31450692 ttaagggaccaaaaatgcaatttagcctttttt 31450660  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39150185 - 39150217
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagcctatttt 33  Q
    |||| ||||||||||||||||||||||||||||    
T  39150185 ttaaaggaccaaaaatgcaatttagcctatttt 39150217  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39912988 - 39913016
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  39912988 ttaagggaccaaaaatgcaatttagccta 39913016  T

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Target: scaffold0809 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4678 - 4706
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  4678 ttaagggaccaaaaatgcaatttagccta 4706  T

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Target: scaffold0168 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 11514 - 11486
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  11514 ttaagggaccaaaaatgcaatttagccta 11486  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 177425 - 177453
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  177425 ttaagggaccaaaaatgcaatttagccta 177453  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 33548153 - 33548125
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  33548153 ttaagggaccaaaaatgcaatttagccta 33548125  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33972535 - 33972563
Alignment:
Q  1 ttaagggaccaaaaatgcaatttagccta 29  Q
    |||||||||||||||||||||||||||||    
T  33972535 ttaagggaccaaaaatgcaatttagccta 33972563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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