View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12607_high_6 (Length: 294)
Name: NF12607_high_6
Description: NF12607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12607_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 30256904 - 30256679
Alignment:
| Q |
1 |
cataaggcaaatgcgtcgtgcaccggagttgtgatgcgaaagtggaagaagaaaactaggacaacaagacgcatgacaatgactatgcgatatggattga |
100 |
Q |
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| T |
30256904 |
cataaggcaaatgcgtcgtgcaccggagttgtgatgcgaaagtggaagaagaaaactaggacaacaagacgcatgacaatgactatgcgatatggattga |
30256805 |
T |
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| Q |
101 |
ttaggctcgaagctattggtactttgcgccataatggttgccttgactcagccagcctgcaagatcataataacagaagaaagaaacatcttaagtaaga |
200 |
Q |
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| T |
30256804 |
ttaggctcgaagctattggtactttgcgccataatggctgccttgactcagccagcctgcaagatcataataacagaagaaagaaacatcttaagtaaga |
30256705 |
T |
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| Q |
201 |
gttgagaagaagaaaatgcattctaa |
226 |
Q |
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| T |
30256704 |
gttgagaagaagaaaatgcattctaa |
30256679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 15170588 - 15170478
Alignment:
| Q |
44 |
ggaagaagaaaactaggacaacaagacgcatgacaatgactatgcgatatggattgattaggctcgaagctattggtactttgcgccataatggttgcct |
143 |
Q |
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| T |
15170588 |
ggaagaagaatgctaggattacaagtctcatgataattactattcggtatggatttatcaagcttgatggtattggaactttgcgccataatggttgtct |
15170489 |
T |
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| Q |
144 |
tgactcagcca |
154 |
Q |
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| T |
15170488 |
tgcttcagcca |
15170478 |
T |
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