View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12607_high_9 (Length: 201)

Name: NF12607_high_9
Description: NF12607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12607_high_9
NF12607_high_9
[»] chr4 (7 HSPs)
chr4 (1-201)||(18655662-18655862)
chr4 (1-201)||(18699585-18699785)
chr4 (1-201)||(18679752-18679952)
chr4 (1-201)||(18731689-18731889)
chr4 (1-163)||(18724270-18724432)
chr4 (16-201)||(17989250-17989433)
chr4 (16-201)||(18073556-18073739)
[»] scaffold0349 (3 HSPs)
scaffold0349 (1-201)||(3620-3820)
scaffold0349 (1-201)||(14553-14752)
scaffold0349 (64-201)||(8062-8199)
[»] scaffold0277 (2 HSPs)
scaffold0277 (1-201)||(4869-5069)
scaffold0277 (1-201)||(13830-14030)
[»] chr6 (52 HSPs)
chr6 (1-201)||(27725043-27725243)
chr6 (1-201)||(28786067-28786267)
chr6 (1-201)||(28792188-28792388)
chr6 (1-201)||(27698692-27698891)
chr6 (1-201)||(27718577-27718777)
chr6 (1-201)||(27229023-27229221)
chr6 (1-201)||(27611200-27611400)
chr6 (1-201)||(28780928-28781128)
chr6 (1-201)||(27604903-27605109)
chr6 (1-201)||(26655778-26655978)
chr6 (1-201)||(26761749-26761949)
chr6 (1-201)||(26802227-26802431)
chr6 (1-200)||(31284078-31284277)
chr6 (1-161)||(26622805-26622965)
chr6 (1-161)||(26728783-26728943)
chr6 (1-192)||(27338263-27338454)
chr6 (1-192)||(27399003-27399194)
chr6 (1-192)||(27678744-27678935)
chr6 (1-161)||(26646302-26646468)
chr6 (1-161)||(26752270-26752436)
chr6 (1-128)||(26884025-26884152)
chr6 (1-192)||(27706600-27706791)
chr6 (1-158)||(27593218-27593375)
chr6 (4-160)||(26861446-26861602)
chr6 (1-158)||(27677812-27677969)
chr6 (7-201)||(26823635-26823823)
chr6 (1-108)||(27531395-27531502)
chr6 (16-201)||(27427816-27427999)
chr6 (132-201)||(25538362-25538431)
chr6 (16-96)||(26048739-26048819)
chr6 (16-96)||(26069908-26069988)
chr6 (131-201)||(26055748-26055818)
chr6 (132-201)||(25481564-25481633)
chr6 (132-201)||(26048667-26048736)
chr6 (132-201)||(26069836-26069905)
chr6 (132-201)||(26075718-26075787)
chr6 (132-201)||(26142687-26142756)
chr6 (16-96)||(25481636-25481716)
chr6 (16-96)||(25538434-25538514)
chr6 (16-96)||(25579613-25579693)
chr6 (76-152)||(26018760-26018836)
chr6 (16-96)||(26055820-26055900)
chr6 (16-96)||(26075790-26075870)
chr6 (76-152)||(26139464-26139540)
chr6 (16-96)||(26142759-26142839)
chr6 (1-168)||(28139363-28139530)
chr6 (4-134)||(28185222-28185352)
chr6 (132-176)||(25579566-25579610)
chr6 (1-44)||(27665315-27665358)
chr6 (37-128)||(28325343-28325434)
chr6 (4-134)||(28180970-28181100)
chr6 (11-71)||(25507111-25507171)
[»] scaffold1254 (1 HSPs)
scaffold1254 (1-192)||(115-306)
[»] scaffold0419 (1 HSPs)
scaffold0419 (1-192)||(7323-7514)
[»] chr1 (3 HSPs)
chr1 (1-187)||(28164547-28164733)
chr1 (1-184)||(28127865-28128042)
chr1 (1-163)||(268542-268704)
[»] chr8 (2 HSPs)
chr8 (1-156)||(29273968-29274123)
chr8 (1-109)||(31903732-31903840)
[»] scaffold0003 (1 HSPs)
scaffold0003 (16-201)||(59364-59547)
[»] scaffold0713 (1 HSPs)
scaffold0713 (76-152)||(5916-5992)
[»] scaffold0019 (1 HSPs)
scaffold0019 (4-128)||(58483-58607)
[»] scaffold0038 (1 HSPs)
scaffold0038 (37-128)||(116658-116749)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 18655662 - 18655862
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18655662 tcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatgcccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 18655761  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||    
T  18655762 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcctagccatgaaaattgagagaaactggatgaaaaaagagtttgagaatgcagaata 18655861  T
Q  201 t 201  Q
    |    
T  18655862 t 18655862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 18699585 - 18699785
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  18699585 tcaatgaaggtgtggattcccttgtcagtaagagctttgtagagatggccagtaaaaccgtcacgagtgtcagtgcccctgaagctgaggaacacttggt 18699684  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  18699685 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgagagaaactagatgaaaaaagagtttgagaatgcagaata 18699784  T
Q  201 t 201  Q
    |    
T  18699785 t 18699785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 18679752 - 18679952
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18679752 tcaatgaaggtgtggattcctttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 18679851  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||| ||||||||| ||||||||||||||||||||||    
T  18679852 aagtgaatcgataggaaaatgaagagaatgaggaaggtgattgcatagccatgaaaatagagagaaactggatgaaaaaagagtttgagaatgcagaata 18679951  T
Q  201 t 201  Q
    |    
T  18679952 t 18679952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 18731689 - 18731889
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18731689 tcaatgaaggtgtggattcccttgtcagtaagagctctgtagagatggccagtaaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggt 18731788  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||||||| ||||||||||||||||||||||    
T  18731789 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgaaaatcgagagaaactggatgaaaaaagagtttgagaatgcagaata 18731888  T
Q  201 t 201  Q
    |    
T  18731889 t 18731889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 18724270 - 18724432
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18724270 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatgaccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 18724369  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgaga 163  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18724370 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgcatagccatgagaattgaga 18724432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 17989250 - 17989433
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgatagg 115  Q
    |||||||||||| ||||||||||  |||||| ||| || |||||||  ||||||||  ||||| |  |  |||||||||| | |||| |||||  |||||    
T  17989250 attcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcatagg 17989349  T
Q  116 aaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |||||||||||||  || ||||| |||| || |||||||||||||||||||||  ||||  | |||||||||||||||||||||||    
T  17989350 aaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaatgcagaatat 17989433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 18073739 - 18073556
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgatagg 115  Q
    |||||||||||| ||||||||||  |||||| ||| || |||||||  ||||||||  ||||| |  |  |||||||||| | |||| |||||  |||||    
T  18073739 attcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcatagg 18073640  T
Q  116 aaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |||||||||||||  || ||||| |||| || |||||||||||||||||||||  ||||  | |||||||||||||||||||||||    
T  18073639 aaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaatgcagaatat 18073556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 3620 - 3820
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || || |||||||||||||    
T  3620 tcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggt 3719  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||    
T  3720 aagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgcagaata 3819  T
Q  201 t 201  Q
    |    
T  3820 t 3820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 14553 - 14752
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || |||| |||||||||||    
T  14553 tcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggt 14652  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  14653 aagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaa-aagagtttgagaatgcagaata 14751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 64 - 201
Target Start/End: Original strand, 8062 - 8199
Alignment:
Q  64 cgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgaga 163  Q
    ||||||||| ||||||| || ||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  8062 cgagtgtcagtgcccctaaaactgaggaacacttggtaagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgaga 8161  T
Q  164 gaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  8162 gaaataggatgaaaaaagagtttgagaatgcagaatat 8199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 4869 - 5069
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || ||||||||||||||||    
T  4869 tcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcaatgcccctaaaactgaggaacacttggt 4968  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||    
T  4969 aagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaata 5068  T
Q  201 t 201  Q
    |    
T  5069 t 5069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 13830 - 14030
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| ||||||| || ||||||||||||||||    
T  13830 tcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggt 13929  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||  | |||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  13930 aagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattcagaata 14029  T
Q  201 t 201  Q
    |    
T  14030 t 14030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 52)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 27725043 - 27725243
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || || |||||||||||||    
T  27725043 tcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggt 27725142  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||    
T  27725143 aagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgcagaata 27725242  T
Q  201 t 201  Q
    |    
T  27725243 t 27725243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 28786267 - 28786067
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || ||||||||||||||||    
T  28786267 tcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggt 28786168  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||    
T  28786167 aagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaata 28786068  T
Q  201 t 201  Q
    |    
T  28786067 t 28786067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 28792388 - 28792188
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || ||||||||||||||||    
T  28792388 tcaatgaaggttttgattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggt 28792289  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||    
T  28792288 aagtgaatccataggaaaatgaagaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaata 28792189  T
Q  201 t 201  Q
    |    
T  28792188 t 28792188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 27698692 - 27698891
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || |||| |||||||||||    
T  27698692 tcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtgccgagtgtcagtgcccctaaaactgatgaacacttggt 27698791  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  27698792 aagtgaatccataggaaaatgaagtggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaa-aagagtttgagaatgcagaata 27698890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 27718577 - 27718777
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  || ||||||| ||  ||||||||| ||||||| || ||||||||||||||||    
T  27718577 tcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaactgtgccgagtgtcagtgcccctaaaactgaggaacacttggt 27718676  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  27718677 aagtgaatccatgggagaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaaagagtttgagaatgcagaata 27718776  T
Q  201 t 201  Q
    |    
T  27718777 t 27718777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 27229221 - 27229023
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| ||||||| || || |||||||||||||    
T  27229221 tcaatgaaggtatggattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtgccgagtgtcagtgcccctaaaactaaggaacacttggt 27229122  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  |||||||| |||||||||||||    
T  27229121 aagtgaatccaaaggaaaatgaagaggaagaggaaggtgattgtatagccatgagacttgagagaaattggatgaa--aagagttttagaatgcagaata 27229024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 27611200 - 27611400
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  || ||||||||||  ||||||||| ||||||| || ||||||||||||||||    
T  27611200 tcaatgaaggtatggattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggt 27611299  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||| ||||||||||||||| || ||||||| | |||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  27611300 aagtgaatccataggaaaatgaagaagaagaggaagctaattgcatagccatgaaaattgagagaaattggatgaaaaaagagtttgagaatgcagaata 27611399  T
Q  201 t 201  Q
    |    
T  27611400 t 27611400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 28781128 - 28780928
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| ||||||| || ||||||||||||||||    
T  28781128 tcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactgaggaacacttggt 28781029  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    ||||||||  | |||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||| |||||||||||||| |||||||    
T  28781028 aagtgaatgcagaggaaaatgaagaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattcagaata 28780929  T
Q  201 t 201  Q
    |    
T  28780928 t 28780928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 27604903 - 27605109
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| ||||||| || || |||||||||||||    
T  27604903 tcaatgaaggtatgaattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtatcgagtgtcagtgcccctaaaactaaggaacacttggt 27605002  T
Q  101 aagtgaatcgataggaaaatgaa------gaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgc 194  Q
    ||||||||  |||||||||||||      ||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27605003 aagtgaatgcataggaaaatgaagaggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgc 27605102  T
Q  195 agaatat 201  Q
    |||||||    
T  27605103 agaatat 27605109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 26655978 - 26655778
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||| || ||||||||||| ||| |||||||||||||||||| ||| ||||||||||  || |||||| ||||||| || ||||||||||||||||    
T  26655978 tcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggt 26655879  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    |  | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  26655878 atttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaata 26655779  T
Q  201 t 201  Q
    |    
T  26655778 t 26655778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 26761949 - 26761749
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||| || ||||||||||| ||| |||||||||||||||||| ||| ||||||||||  || |||||| ||||||| || ||||||||||||||||    
T  26761949 tcaatgaaagtatggattcccttatcaataagagccttgtagagattgccggtaaaaccgtgccgggtgtcaatgcccctaaaactgaggaacacttggt 26761850  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    |  | || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||    
T  26761849 atttaaacccataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaata 26761750  T
Q  201 t 201  Q
    |    
T  26761749 t 26761749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 26802431 - 26802227
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||  ||||||||| ||||||| || ||||||||||||||||    
T  26802431 tcaatgaaggtatggattcccttgtcaataagagccttgtagagattgcccgtaaaaccgtaccgagtgtcagtgcccctaaaactgaggaacacttggt 26802332  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatg----aaataagagtttgagaatgcag 196  Q
    ||||||||| ||| ||||||||||||||||||||||| || || |||||||||| ||||| |||||||||||||    ||| ||||||||||||||||||    
T  26802331 aagtgaatccataagaaaatgaagaggatgaggaaggagactgcatagccatgaaaattgtgagaaattggatgaaaaaaaaaagagtttgagaatgcag 26802232  T
Q  197 aatat 201  Q
    |||||    
T  26802231 aatat 26802227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 31284277 - 31284078
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |  ||||||||||| |||||||| || ||||| |||||||    
T  31284277 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagattgccggtgaaaccataccgagtgtcacttcccctgaaactaaggaatacttggt 31284178  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaata 200  Q
    |  |||||  |||||||| ||||||||| ||||||| |||||| |||||||||||| |||||||||  ||||||||  |||| |||||||||||||||||    
T  31284177 atttgaatacataggaaattgaagaggaagaggaagatgattgcatagccatgagatttgagagaatatggatgaagaaagaatttgagaatgcagaata 31284078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 26622965 - 26622805
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||  |||||||||||||| ||||| || |||||||||||||    
T  26622965 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggt 26622866  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattga 161  Q
    |  ||||| ||||||||| ||||||||| ||||| |||||||| |||||||||| ||||||    
T  26622865 atttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatgataattga 26622805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 26728943 - 26728783
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||  |||||||||||||| ||||| || |||||||||||||    
T  26728943 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatttccagtgaaaccgtaccgagtgtcactgcctctgaaacttaggaacacttggt 26728844  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattga 161  Q
    |  ||||| ||||||||| ||||||||| ||||| |||||||| |||||||||| ||||||    
T  26728843 atttgaattgataggaaattgaagaggaagaggatggtgattgcatagccatgataattga 26728783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 27338263 - 27338454
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| | ||||||||||||| |||||||||||||||||| ||| |||||||||| | |||||||| || |||| || ||||||||||| ||||    
T  27338263 tcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggt 27338362  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaat 192  Q
    |  |||| | | |||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||  ||||||| || |||||||||||    
T  27338363 atttgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttgagaat 27338454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 27399003 - 27399194
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| | ||||||||||||| |||||||||||||||||| ||| |||||||||| | |||||||| || |||| || ||||||||||| ||||    
T  27399003 tcaatgaaggttttgattcccttgtcaataagagccttgtagagattgccggtaaaaccgtaaagagtgtcaatgtccctaaaactgaggaacacatggt 27399102  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaat 192  Q
    |  |||| | | |||||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||  ||||||| || |||||||||||    
T  27399103 atttgaacccagaggaaattgaagaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttgagaat 27399194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 27678935 - 27678744
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||  || || |||||||  ||||||||||| || ||||| |||||||| |||||||    
T  27678935 tcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattcccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggt 27678836  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaat 192  Q
    |  || |   |||||||| ||||| ||| |||||||||||||| |||||||||||| || ||||||||| ||||||| ||||||||||||||    
T  27678835 atttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatgagattttagagaaattagatgaaaaaagagtttgagaat 27678744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 26646468 - 26646302
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| || ||||    
T  26646468 tcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacctggt 26646369  T
Q  101 aagtgaatcgataggaaa------atgaagaggatgaggaaggtgattgtatagccatgagaattga 161  Q
    | |||||||  |||||||      | ||||||||  ||||||| ||||| |||||||||||||||||    
T  26646368 aggtgaatccgtaggaaattaaagaggaagaggaataggaaggagattgcatagccatgagaattga 26646302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 26752436 - 26752270
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||| || ||||    
T  26752436 tcaatgaaggtgtgaattcccttgtcagtaagagccttgtagagatgtccagtaaaaccgtcacgagtgtcactgcccctgaagttgaggaagacctggt 26752337  T
Q  101 aagtgaatcgataggaaa------atgaagaggatgaggaaggtgattgtatagccatgagaattga 161  Q
    | |||||||  |||||||      | ||||||||  ||||||| ||||| |||||||||||||||||    
T  26752336 aggtgaatccgtaggaaattaaagaggaagaggaataggaaggagattgcatagccatgagaattga 26752270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 26884152 - 26884025
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||| |  ||||||||||| || ||||| ||||||||||||||||    
T  26884152 tcaatgaaggtgtggattcccttgttagtaagagccttgtagagatttccagtgaaaccataccgagtgtcacttcctctgaaactgaggaacacttggt 26884053  T
Q  101 aagtgaatcgataggaaaatgaagagga 128  Q
    ||||||||| ||||||||||||||||||    
T  26884052 aagtgaatccataggaaaatgaagagga 26884025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 27706600 - 27706791
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||||||||||||||||||||||  || |||||||||||||| ||| || |||||||  ||||||||||  || ||||| |||||||| |||||||    
T  27706600 tcaatgaaggtgtggattcccttgtcatcaaaagccttgtagagattgcctgtgaaaccgtaccgagtgtcacctcctctgaaactgaggaatacttggt 27706699  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaat 192  Q
    |  || |   |||||||| ||||| ||| ||| |||||||||| |||||||||||| || ||||||||| ||||||| ||||||||||||||    
T  27706700 atttgtactcataggaaattgaagtggaagagaaaggtgattgcatagccatgagattttagagaaattagatgaaaaaagagtttgagaat 27706791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 27593218 - 27593375
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||| || |||||||  ||||||||||| || ||||| |||||||| |||||||    
T  27593218 tcaatgaaggtgttgattcccttgtcagtaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaactgaggaatacttggt 27593317  T
Q  101 aagtg-aatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaat 158  Q
    |  || |||| |||||||| ||||| ||| |||||||||||||| ||||||||||||||    
T  27593318 atttgtaatc-ataggaaattgaagtggaagaggaaggtgattgcatagccatgagaat 27593375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 4 - 160
Target Start/End: Complemental strand, 26861602 - 26861446
Alignment:
Q  4 atgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaag 103  Q
    ||||||||||| |||||||||||||||||||||||||||||||  || |||||||| |  ||||||||||| || ||||| |||||||| || |||||      
T  26861602 atgaaggtgtgaattcccttgtcagtaagagccttgtagagattaccggtaaaaccataccgagtgtcacttcctctgaaactgaggaatacctggtatt 26861503  T
Q  104 tgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattg 160  Q
    |||||| ||||||||  |||||||| ||| |||||||||| |||||||| |||||||    
T  26861502 tgaatccataggaaatggaagaggaagagcaaggtgattgcatagccatcagaattg 26861446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 27677812 - 27677969
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| ||| || |||||||  ||||||||||| || |||||  ||||||| |||||||    
T  27677812 tcaatgaaggtgtggattcccttgtcatcaagagccttgtagagattgccggtgaaaccgtaccgagtgtcacttcctctgaaattgaggaatacttggt 27677911  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaat 158  Q
    |  || |   |||||||| ||||| ||| |||||||||||||| ||||||||||||||    
T  27677912 atttgtactcataggaaattgaagtggaagaggaaggtgattgcatagccatgagaat 27677969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 7 - 201
Target Start/End: Complemental strand, 26823823 - 26823635
Alignment:
Q  7 aaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtga 106  Q
    |||||||||||||||||||| ||||||||||||||||||| ||| |||||  | |  |||||||||  ||| || || ||||| |||||||||||  |||    
T  26823823 aaggtgtggattcccttgtctgtaagagccttgtagagattgccggtaaattcataccgagtgtcagcgcctctaaaactgagaaacacttggtatttga 26823724  T
Q  107 atcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |   ||| |||| |||||||||      || ||| || |||||||||||||||||||||||||||| |||  |||||||||||||||||||||||    
T  26823723 aatcatatgaaactgaagagga------agttgactgcatagccatgagaattgagagaaattggacgaagaaagagtttgagaatgcagaatat 26823635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 27531395 - 27531502
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||  || ||||||||||  ||||||||   |||||| || ||||||||||||||||    
T  27531395 tcaatgaaggtatagattcccttgtcagtaagagccttgtagagatttccggtaaaaccgtggcgagtgtccgcgcccctaaaactgaggaacacttggt 27531494  T
Q  101 aagtgaat 108  Q
    ||||||||    
T  27531495 aagtgaat 27531502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 27427816 - 27427999
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgatagg 115  Q
    |||||||||||| ||||||||||  |||||| ||| || |||||||  ||||||||  ||||| |  |  |||||||||| | |||| |||||  |||||    
T  27427816 attcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcatagg 27427915  T
Q  116 aaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |||||||||||||  || ||||| |||| || |||||||||||||||||||||  ||||  | |||||||||||||||||||||||    
T  27427916 aaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaatgcagaatat 27427999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 25538431 - 25538362
Alignment:
Q  132 ggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |||||||||||| ||||||||||||||||| |||| |||||||||| |||| ||||| |||| |||||||    
T  25538431 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaagactttgaaaatggagaatat 25538362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 26048819 - 26048739
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 96  Q
    |||||||||||| | |||||||| |||||||  || ||||||  ||| |||||||||||||||||||| ||||||||||||    
T  26048819 attcccttgtcaatgagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaactgaggaacact 26048739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 26069988 - 26069908
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 96  Q
    |||||||||||| | |||||||| |||||||  || ||||||  ||| |||||||||||||||||||| ||||||||||||    
T  26069988 attcccttgtcaatgagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaactgaggaacact 26069908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 201
Target Start/End: Complemental strand, 26055818 - 26055748
Alignment:
Q  131 aggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    ||||||||||||| ||||||||||||||||| ||||  ||||||||| |||| ||||| |||| |||||||    
T  26055818 aggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatat 26055748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 25481633 - 25481564
Alignment:
Q  132 ggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |||||||||||| ||||||||||||||||| |||| |||||||||| || | ||||| |||| |||||||    
T  25481633 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaaaactttgaaaatggagaatat 25481564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 26048736 - 26048667
Alignment:
Q  132 ggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |||||||||||| ||||||||||||||||| ||||  ||||||||| |||| ||||| |||| |||||||    
T  26048736 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatat 26048667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 26069905 - 26069836
Alignment:
Q  132 ggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |||||||||||| ||||||||||||||||| ||||  ||||||||| |||| ||||| |||| |||||||    
T  26069905 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatat 26069836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 26075787 - 26075718
Alignment:
Q  132 ggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |||||||||||| ||||||||||||||||| ||||  ||||||||| |||| ||||| |||| |||||||    
T  26075787 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatat 26075718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 26142756 - 26142687
Alignment:
Q  132 ggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |||||||||||| ||||||||||||||||| ||||  ||||||||| |||| ||||| |||| |||||||    
T  26142756 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatat 26142687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 25481716 - 25481636
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 96  Q
    ||||||||||||  ||||||||| |||||||  || ||||||  ||| ||||||||||||||||||||  |||||||||||    
T  25481716 attcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaattgaggaacact 25481636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 25538514 - 25538434
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 96  Q
    ||||||||||||  ||||||||| |||||||  || |||||   ||| |||||||||||||||||||| ||||||||||||    
T  25538514 attcccttgtcaacaagagccttatagagattaccggtaaatttgttgcgagtgtcactgcccctgaaactgaggaacact 25538434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 25579693 - 25579613
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 96  Q
    ||||||||||||  ||||||||| |||||||  || ||||||  ||| |||||||||||||| ||||| ||||||||||||    
T  25579693 attcccttgtcaacaagagccttatagagattaccggtaaaagtgttgcgagtgtcactgcctctgaaactgaggaacact 25579613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 26018760 - 26018836
Alignment:
Q  76 cccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccat 152  Q
    ||||||||| |||||||||||||||| |||| || ||||||||| || ||||  || ||||||||||| ||||||||    
T  26018760 cccctgaagttgaggaacacttggtatgtgagtccataggaaaaggatgaggtagacgaaggtgattgaatagccat 26018836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 26055900 - 26055820
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 96  Q
    ||||||||||||  ||||||||| |||||||  || ||||||  ||| ||||||||||||||||||||  |||||||||||    
T  26055900 attcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaaatgaggaacact 26055820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 26075870 - 26075790
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 96  Q
    ||||||||||||  ||||||||| |||||||  || ||||||  ||| ||||||||||||||||||||  |||||||||||    
T  26075870 attcccttgtcaacaagagccttatagagattaccggtaaaattgttgcgagtgtcactgcccctgaaattgaggaacact 26075790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 26139464 - 26139540
Alignment:
Q  76 cccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccat 152  Q
    ||||||||| |||||||||||||||| |||| || ||||||||| || ||||  |||||||||||||| ||| ||||    
T  26139464 cccctgaagttgaggaacacttggtatgtgagtccataggaaaaggatgaggtagaggaaggtgattgaataaccat 26139540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 26142839 - 26142759
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacact 96  Q
    ||||||||||||  ||||||||| |||||||  || |||||   ||| |||||||||||||||||||| ||||||||||||    
T  26142839 attcccttgtcaacaagagccttatagagattaccggtaaatttgttgcgagtgtcactgcccctgaaactgaggaacact 26142759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #46
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 28139530 - 28139363
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||| || |||||||||||   ||||  |||||| ||||||||||  ||||| ||||||  ||||||||||||||| ||||||||||| || || | ||    
T  28139530 tcaataaaagtgtggattccacagtcacgaagagctttgtagagatttccagtgaaaccgaaacgagtgtcactgcctctgaagctgagaaagacatcgt 28139431  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaat 168  Q
    | ||||| | |||||| || ||||  || || ||||||| ||| | |||||||| ||| |||| ||||    
T  28139430 atgtgaagccataggagaaagaagtagaagaagaaggtggttgcaaagccatgaaaatagagaaaaat 28139363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #47
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 28185352 - 28185222
Alignment:
Q  4 atgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaag 103  Q
    ||||||||  ||||||||||||||  ||||||  | | |||||  ||||||||||  | |||||||||||| || || ||||| |||||||| |  || |    
T  28185352 atgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaacgataacgagtgtcactacctctaaagctaaggaacacgtcatagg 28185253  T
Q  104 tgaatcgataggaaaatgaagaggatgagga 134  Q
    |||||| |||||| || ||||||||||||||    
T  28185252 tgaatccataggagaaggaagaggatgagga 28185222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #48
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 176
Target Start/End: Complemental strand, 25579610 - 25579566
Alignment:
Q  132 ggaaggtgattgtatagccatgagaattgagagaaattggatgaa 176  Q
    |||||||||||| ||||||||||||||||| |||| |||||||||    
T  25579610 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaa 25579566  T

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Target: chr6; HSP #49
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27665315 - 27665358
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagag 44  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||    
T  27665315 tcaatgaaggtgtggattcctttgtcagaaagagccttatagag 27665358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #50
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 28325434 - 28325343
Alignment:
Q  37 ttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagga 128  Q
    ||||||||||  ||||||||||| | |||||||||||| || || || || |||||||| |  || ||||||| ||||||||| ||||||||    
T  28325434 ttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 28325343  T

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Target: chr6; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 28181100 - 28180970
Alignment:
Q  4 atgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaag 103  Q
    ||||||||  ||||||||||||||  ||||||  | | |||||  ||||||||||| | |||||||||||  || || ||||| |||||| | |  || |    
T  28181100 atgaaggttcggattcccttgtcacaaagagctctattgagatttccagtaaaaccataacgagtgtcaccacctctaaagctaaggaacgcgtcatagg 28181001  T
Q  104 tgaatcgataggaaaatgaagaggatgagga 134  Q
    |||||| |||||| || ||||||||||||||    
T  28181000 tgaatccataggagaaggaagaggatgagga 28180970  T

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Target: chr6; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 25507111 - 25507171
Alignment:
Q  11 tgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtc 71  Q
    |||| ||||||||||||   |||||| |||||||||||| |||||||| | ||||||||||    
T  25507111 tgtgaattcccttgtcatatagagccgtgtagagatggctagtaaaacggctacgagtgtc 25507171  T

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Target: scaffold1254 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 115 - 306
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| ||||||| || || |||||||||||||    
T  115 tcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggt 214  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaat 192  Q
    ||||||||  ||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  215 aagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttgagaat 306  T

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Target: scaffold0419 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 7514 - 7323
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||| | |||||||||||||||||||||||||||||||| ||| ||||||||||  ||||||||| ||||||| || || |||||||||||||    
T  7514 tcaatgaaggttttgattcccttgtcagtaagagccttgtagagattgccggtaaaaccgtggcgagtgtcagtgcccctaaaactaaggaacacttggt 7415  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaat 192  Q
    ||||||||  ||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  7414 aagtgaatgcatatgaaaatgaagaggaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttgagaat 7323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 28164547 - 28164733
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||| ||||| |||||||||||   ||| ||||| |||||||||||||| ||||||| |||||||||||||||||| || ||||||||||||||||    
T  28164547 tcaatgaatgtgtgaattcccttgtcgtcaagggccttatagagatggccagtgaaaccgtcacgagtgtcactgcccctaaaactgaggaacacttggt 28164646  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttg 187  Q
    | ||||||| |||||||| ||||||||| |||||| | ||| ||||||||||||||||||| ||||||||||||| | |||||||||    
T  28164647 atgtgaatccataggaaattgaagaggaagaggaatgcgatcgtatagccatgagaattgacagaaattggatgagaaaagagtttg 28164733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 28127865 - 28128042
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||| ||||||||||||||||||  ||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  28127865 tcaatgaatgtgtggattcccttgtcataaagggccttgtagagatggccagtgaaaccgtcacgagtgtcactgcccctgaagctgaggaacacttggt 28127964  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagt 184  Q
    | ||||||| |||||||| ||||      |||||| ||||||| ||||||||||||||||| | ||||||||||| | ||||||    
T  28127965 atgtgaatccataggaaattgaa------gaggaatgtgattgcatagccatgagaattgacaaaaattggatgagaaaagagt 28128042  T

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Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 268542 - 268704
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||| ||| |||||| ||||||| || ||||    
T  268542 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccaataaaaccctcacgagtgtcaccgcctctgaagttgaggaagacctggt 268641  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgagaattgaga 163  Q
    | |  |||| ||| || | ||||||||| |||||||||||||| ||||||||||||| |||||    
T  268642 aggcaaatccatatgagattgaagaggaagaggaaggtgattgcatagccatgagaactgaga 268704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 29273968 - 29274123
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||| ||| || ||| ||||||| || ||||    
T  29273968 tcaatgaaggtgtggattcccttgtcagtaagagtcttgtagagatggccaataaaaccgtcacgagtgtcaccgcctctaaagttgaggaagacctggt 29274067  T
Q  101 aagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccatgaga 156  Q
    ||||||||| ||| || | ||||||||| |||||||||||||| ||||||||||||    
T  29274068 aagtgaatccatatgagattgaagaggaagaggaaggtgattgcatagccatgaga 29274123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 31903840 - 31903732
Alignment:
Q  1 tcaatgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggt 100  Q
    ||||| ||||||||||||||||| |||  |||||| ||||||||||  ||||||||||| |  ||||||||   ||| || |||||||||||||| | ||    
T  31903840 tcaataaaggtgtggattcccttatcataaagagctttgtagagatttccagtaaaaccatagcgagtgtctaagcctctaaagctgaggaacacatcgt 31903741  T
Q  101 aagtgaatc 109  Q
    | |||||||    
T  31903740 aggtgaatc 31903732  T

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Target: scaffold0003 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 201
Target Start/End: Complemental strand, 59547 - 59364
Alignment:
Q  16 attcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgatagg 115  Q
    |||||||||||| ||||||||||  |||||| ||| || |||||||  ||||||||  ||||| |  |  |||||||||| | |||| |||||  |||||    
T  59547 attcccttgtcaataagagccttcaagagattgccggtgaaaccgtaccgagtgtcggtgcccttacaaatgaggaacacatcgtaactgaatgcatagg 59448  T
Q  116 aaaatgaagaggatgaggaaggtgattgtatagccatgagaattgagagaaattggatgaaataagagtttgagaatgcagaatat 201  Q
    |||||||||||||  || ||||| |||| || |||||||||||||||||||||  ||||  | |||||||||||||||||||||||    
T  59447 aaaatgaagaggaatagaaaggtaattgcatggccatgagaattgagagaaataagatg--agaagagtttgagaatgcagaatat 59364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 5992 - 5916
Alignment:
Q  76 cccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagaggatgaggaaggtgattgtatagccat 152  Q
    ||||||||| |||||||||||||||| |||| || ||||||||| || ||||  |||||||||||||| ||| ||||    
T  5992 cccctgaagttgaggaacacttggtatgtgagtccataggaaaaggatgaggtagaggaaggtgattgaataaccat 5916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 58483 - 58607
Alignment:
Q  4 atgaaggtgtggattcccttgtcagtaagagccttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaag 103  Q
    ||||||||  ||||||||||||||  ||||||  |||||||||  ||||||||||| |  ||||||||||  || || ||||| |||||||| || || |    
T  58483 atgaaggttcggattcccttgtcacaaagagctctgtagagatttccagtaaaaccatagcgagtgtcacaacctctaaagctaaggaacacgtgatagg 58582  T
Q  104 tgaatcgataggaaaatgaagagga 128  Q
    |||||| |||||| || ||||||||    
T  58583 tgaatccataggagaaggaagagga 58607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 116749 - 116658
Alignment:
Q  37 ttgtagagatggccagtaaaaccgttacgagtgtcactgcccctgaagctgaggaacacttggtaagtgaatcgataggaaaatgaagagga 128  Q
    ||||||||||  ||||||||||| | |||||||||||| || || || || |||||||| |  || ||||||| ||||||||| ||||||||    
T  116749 ttgtagagatttccagtaaaaccataacgagtgtcactacctctaaaactaaggaacacgtcataggtgaatccataggaaaaggaagagga 116658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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