View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12607_low_1 (Length: 467)
Name: NF12607_low_1
Description: NF12607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12607_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 171 - 403
Target Start/End: Complemental strand, 27562186 - 27561954
Alignment:
| Q |
171 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
270 |
Q |
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| T |
27562186 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
27562087 |
T |
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| Q |
271 |
ttttcatgtatgtttatttccagaatgaactaaatgatgataatatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
27562086 |
ttttcatgtatgtttatttccagaatgaactaaatgatgataatatgtacacacttcccgagtatactctatggaaaatgatcaacttcaacattggatc |
27561987 |
T |
|
| Q |
371 |
gctgaattggatagatataaatcattaacagtg |
403 |
Q |
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| T |
27561986 |
gctgaattggatagatataaatcattaacagtg |
27561954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 172 - 401
Target Start/End: Complemental strand, 36669239 - 36669011
Alignment:
| Q |
172 |
gaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatct |
271 |
Q |
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||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||| |||| |||||||||| ||||||||||| |
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| T |
36669239 |
gaacttcaggtttgtaaatttgaactatctgcaatggttttgtcattatttcttcagtaattgagatgcattgactc-agggttccatctaaaagtatct |
36669141 |
T |
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| Q |
272 |
tttcatgtatgtttatttccagaatgaactaaatgatgataa-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggatc |
370 |
Q |
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| T |
36669140 |
tttcatgtatgtttatt-ccagaatgaactaaatgatgataagtatgtacgcacttcccgagtatactctttggcaaaggatcaacttcaacattggatt |
36669042 |
T |
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| Q |
371 |
gctgaattggatagatataaatcattaacag |
401 |
Q |
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| T |
36669041 |
gctgaattggatagatttaaatcattgacag |
36669011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 27562394 - 27562234
Alignment:
| Q |
12 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat |
111 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27562394 |
gcagagagagccatggttttgtctgtgttgaagaattcaattgaggaagccaaggttttattttttgcgatttctttccttctgtcattcatttgtcgat |
27562295 |
T |
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| Q |
112 |
tctgtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
172 |
Q |
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| T |
27562294 |
tctgtctgagatatatgcttggctgatgtcatagatagtgaattctgatcgtctttctgag |
27562234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 36669449 - 36669288
Alignment:
| Q |
12 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat |
111 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||| | |||||| ||||| | |||||||||||||||||||||||||||||||| |
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| T |
36669449 |
gcagagagagctatgggtttgtctgagttgaagaattcaattgaggaagtgaaggttttattttt-gtgatttctttccttctgtcattcatttgtcgat |
36669351 |
T |
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| Q |
112 |
tct--gtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
172 |
Q |
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||| || | |||| ||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
36669350 |
tctctgtctaagatttatgcttggctgatatcatagatagtgaatgctgatcgtctttctgag |
36669288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 171 - 396
Target Start/End: Complemental strand, 29411725 - 29411503
Alignment:
| Q |
171 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
270 |
Q |
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|||||||||||||||| |||||||||||||||||||| | || |||||||||||||||||| ||| | |||| | | |||||||||||||||||||||| |
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| T |
29411725 |
agaacttcaggtttgtcaatttgagctatctgcaatggtgttatcattatttcttgagtaattgaaacacattcattatagggttccatgtaaaagtatc |
29411626 |
T |
|
| Q |
271 |
ttttcatgtatgtttatttccagaatgaactaaatgatgataa-tatgtacacacttcccgagtatactctatggcaaatgatcaacttccacattggat |
369 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||| |||||||||||||||||| ||| ||||| |
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| T |
29411625 |
ttttc----gtgtttatttccagaatgaactaaatgatgataagtatgtacgcaattcccgagtatactctttggcaaatgatcaacttcaacactggat |
29411530 |
T |
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| Q |
370 |
cgctgaattggatagatataaatcatt |
396 |
Q |
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||||||||||| |||||||||||||| |
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| T |
29411529 |
tgctgaattggacagatataaatcatt |
29411503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 29411938 - 29411773
Alignment:
| Q |
12 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgattt-ctttccttctgtcattcattt--gtc |
108 |
Q |
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||||| || |||||||||||||| | ||||||| | |||||||||||||||| ||||| |||||| ||||| ||||||||| ||||||||| ||| |
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| T |
29411938 |
gcagatagggccatgggtttgtccgagttgaagcactcaattgaggaagccaaggtttaactttttgtgattttctttccttccaccattcatttttgtc |
29411839 |
T |
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| Q |
109 |
gattct--gtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
172 |
Q |
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|||||| || | |||| |||| || ||||||||||||||| |||||||||||||||||||||||| |
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| T |
29411838 |
gattctttgtctaagatgtatgtttggctgatgtcatagatcgtgaatgctgatcgtctttctgag |
29411773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 168
Target Start/End: Complemental strand, 26928930 - 26928772
Alignment:
| Q |
12 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat |
111 |
Q |
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|||||||||||||| |||||| | ||||| ||||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||||||| |
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| T |
26928930 |
gcagagagagccattactttgtccgacttgaaaaattcaattgaggaagccaaggttttattttttgtgatttctttccttctctcattcatttgtcgat |
26928831 |
T |
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| Q |
112 |
--tctgtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttc |
168 |
Q |
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||||| | |||||||||||| |||||||||| |||||||||||| |||||||||||| |
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| T |
26928830 |
tctctgtctaagatatatgcttggctgatgtcacagatagtgaatgatgatcgtctttc |
26928772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 26928703 - 26928621
Alignment:
| Q |
204 |
aatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgttta |
286 |
Q |
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|||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||| |||| |||||| |
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| T |
26928703 |
aatggttttgtcattatttcttgagtaatttagatgcatatactctagggttccatgtaaaagtatatttttatgtgtgttta |
26928621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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