View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12607_low_7 (Length: 249)
Name: NF12607_low_7
Description: NF12607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12607_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 22043722 - 22043942
Alignment:
| Q |
1 |
catgacacaccttcaacctgattgccattgctatatggattaaatattgtttgtaaacttataataatgcaaggtgttctacttttcaggtacatcccat |
100 |
Q |
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| T |
22043722 |
catgacacagtttcaacctgattgccattgctatatggattaaatattgtttgtaaacttataataatgcaaggtgttctacttttcaggtacatcccat |
22043821 |
T |
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| Q |
101 |
tttctactttttagtctcttaataaatttactaactacgttatattttactgatgtatcttgttacgtctgaatgcgatatacatttttcaaacttttaa |
200 |
Q |
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| T |
22043822 |
tttctactttttagtctcttaataaatttactaactacgttatatttta-------------------ctgaatgcgatatacatttttcaaacttttaa |
22043902 |
T |
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| Q |
201 |
cttgacttcctgcatttaattgacactcttttgtctctgc |
240 |
Q |
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| T |
22043903 |
catcacttcctgcatttaattgacactcttttgtcactgc |
22043942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 84 - 240
Target Start/End: Complemental strand, 2423119 - 2422963
Alignment:
| Q |
84 |
tttcaggtacatcccattttctactttttagtctcttaataaatttactaactacgttatattttactgatgtatcttgttacgtctgaatgcgatatac |
183 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
2423119 |
tttccggtacatcccattttctactttttagtctcttaataaatttactaactacgttatattttactaatgtatcttgttacgtctgaatgtgatatac |
2423020 |
T |
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| Q |
184 |
atttttcaaacttttaacttgacttcctgcatttaattgacactcttttgtctctgc |
240 |
Q |
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| T |
2423019 |
atttttcaaacttttaacttcacttgctgcatttaattgacaatcttttgtcactgc |
2422963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 2423484 - 2423393
Alignment:
| Q |
1 |
catgacacaccttcaacctga-ttgccattgctatatggattaaatattgtttgtaaacttataataatgcaaggtgttctacttttcaggt |
91 |
Q |
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||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2423484 |
catgacacaccttcaacctgaattgccattgctaaatagattaaatattgtttgtaaacttacaataatgcaaggtgttctacttttcaggt |
2423393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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