View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12608_high_1 (Length: 447)

Name: NF12608_high_1
Description: NF12608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12608_high_1
NF12608_high_1
[»] chr4 (6 HSPs)
chr4 (93-437)||(3311902-3312254)
chr4 (94-297)||(45837654-45837857)
chr4 (93-332)||(49947016-49947256)
chr4 (93-218)||(37941432-37941557)
chr4 (85-168)||(25040348-25040431)
chr4 (93-165)||(12813983-12814055)
[»] scaffold0548 (1 HSPs)
scaffold0548 (93-339)||(9809-10056)
[»] chr3 (7 HSPs)
chr3 (93-339)||(15102948-15103195)
chr3 (93-351)||(13371772-13372031)
chr3 (90-219)||(20129438-20129567)
chr3 (129-336)||(52613054-52613262)
chr3 (92-221)||(15097310-15097439)
chr3 (167-298)||(19911136-19911267)
chr3 (94-165)||(27356629-27356700)
[»] chr5 (10 HSPs)
chr5 (93-345)||(17943064-17943317)
chr5 (90-332)||(32664371-32664614)
chr5 (93-332)||(17009780-17010020)
chr5 (93-351)||(20027662-20027922)
chr5 (93-219)||(8376066-8376192)
chr5 (99-209)||(8376231-8376341)
chr5 (91-218)||(36516940-36517067)
chr5 (91-316)||(14481690-14481914)
chr5 (92-188)||(31308780-31308876)
chr5 (129-165)||(10497240-10497276)
[»] chr7 (10 HSPs)
chr7 (92-351)||(23925615-23925875)
chr7 (93-351)||(22938857-22939116)
chr7 (93-332)||(24501542-24501782)
chr7 (92-321)||(27288944-27289173)
chr7 (92-217)||(21740320-21740443)
chr7 (92-349)||(11512900-11513171)
chr7 (92-349)||(11506177-11506448)
chr7 (92-155)||(14154132-14154195)
chr7 (247-333)||(21739197-21739284)
chr7 (93-165)||(20571462-20571534)
[»] chr1 (4 HSPs)
chr1 (94-338)||(36478701-36478946)
chr1 (94-351)||(17176038-17176296)
chr1 (32-90)||(29254138-29254196)
chr1 (95-178)||(41944033-41944116)
[»] scaffold0089 (1 HSPs)
scaffold0089 (92-351)||(32775-33035)
[»] chr6 (6 HSPs)
chr6 (90-351)||(22474362-22474623)
chr6 (91-332)||(16729581-16729823)
chr6 (91-202)||(33292415-33292526)
chr6 (94-219)||(20511834-20511959)
chr6 (92-165)||(28247598-28247671)
chr6 (96-183)||(14267287-14267374)
[»] chr8 (6 HSPs)
chr8 (93-314)||(6813846-6814065)
chr8 (90-205)||(16230243-16230358)
chr8 (93-316)||(25043130-25043353)
chr8 (91-188)||(4685745-4685842)
chr8 (95-154)||(14128592-14128651)
chr8 (245-321)||(16232355-16232431)
[»] chr2 (6 HSPs)
chr2 (93-321)||(12630062-12630289)
chr2 (91-316)||(33736946-33737171)
chr2 (90-321)||(22197913-22198142)
chr2 (93-188)||(5562545-5562640)
chr2 (28-66)||(32718510-32718548)
chr2 (28-66)||(32724915-32724953)
[»] scaffold0038 (1 HSPs)
scaffold0038 (92-165)||(47760-47833)
[»] scaffold0665 (1 HSPs)
scaffold0665 (95-154)||(2794-2853)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 93 - 437
Target Start/End: Original strand, 3311902 - 3312254
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  3311902 cactaccacaattttggcttttaatagcacaatttcaatagcgcatctggataaacgctattaaaaatgcaacccatagacctgttatagcgctttacag 3312001  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcag-aaaacgct 291  Q
    |||| ||||||||||||||||| ||||||||||| ||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||    
T  3312002 aaagtgctaagaaaaacttgtttaaaattggactagatggcgctcttctgcaagcgctattattttggttcacactaatagcgcttttcagaaaaacgct 3312101  T
Q  292 atagttggagggggtatagatagcgcttttacaaacgctattgtttggctttatgaaaat-------nnnnnnnnnnggcagataagatttcatcacgca 384  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||    
T  3312102 atagttggagggggtatagatagcgtttttacaaacgctattgtttggctttatgaaaataaaaaaataaaaaaaaaggcagataagatttcatcacgca 3312201  T
Q  385 caaaacacttttctcaccaaacccactcattcactcacaaaacctcttctctg 437  Q
    |||||||||| |||||||||||||||||||||||| |||||| ||||||||||    
T  3312202 caaaacacttctctcaccaaacccactcattcactgacaaaaactcttctctg 3312254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 94 - 297
Target Start/End: Original strand, 45837654 - 45837857
Alignment:
Q  94 actaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacaga 193  Q
    |||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  45837654 actaccacaattttggcttttaatagcacaattttaatagcccttctggataaatgctattaaaaatgcaacccatagacgtgttatagcacttttcaga 45837753  T
Q  194 aagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgctat 293  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||| | || || ||||||| |||| ||||||||||||||| ||||| ||||    
T  45837754 aagcgctaagaaaaacttgttaaaaattggactagatagcgctcttctgcaaacactgttattttggtgcacactaatagcgcttttcaaaaaacactat 45837853  T
Q  294 agtt 297  Q
    ||||    
T  45837854 agtt 45837857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 93 - 332
Target Start/End: Complemental strand, 49947256 - 49947016
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| | |||||||||||||||||||||||   |||||||||||||| |||| | |||    
T  49947256 cactaccacaattttgtcttttaatagcacaattttaatagcgtttttagataaatgctattaaaaatgcaaattatagacctgttataacactcttcag 49947157  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    |||||||||| |||| ||||| ||||| |||  | ||||||||| || |  |||||||||| || | ||||  | ||||||||||||| |||||||||||    
T  49947156 aaagcgctaaaaaaagcttgtgaaaaactgggttagatagcgcttttctataagcgctattattcttgttcgtactaatagcgcttttaagaaaacgcta 49947057  T
Q  293 tagttggagggggtatagatagcgctttt-acaaacgctat 332  Q
    | |||| ||||||||||||||||| |||| |||||||||||    
T  49947056 ttgttgaagggggtatagatagcgtttttcacaaacgctat 49947016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 37941432 - 37941557
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  37941432 cactatcacaattttggcttttaatagcataattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttacag 37941531  T
Q  193 aaagcgctaagaaaaacttgttaaaa 218  Q
    |||| |||||||||||| ||||||||    
T  37941532 aaagagctaagaaaaacatgttaaaa 37941557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 25040431 - 25040348
Alignment:
Q  85 aaataattcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaaccca 168  Q
    |||| ||||||||| |||||||||| |||||||||| |||||| |||||| ||| |||||||| |||||||||||  |||||||    
T  25040431 aaattattcactactacaattttggtttttaatagcgcaattttaatagcttttatggataaacgctattaaaaacacaaccca 25040348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 12813983 - 12814055
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaac 165  Q
    |||||||||||||||||||||||||||| ||| |  |||||||||| |  ||||||||||||||||| |||||    
T  12813983 cactaccacaattttggcttttaatagcgcaagtataatagcgtttttatataaatgctattaaaaaggcaac 12814055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 93 - 339
Target Start/End: Original strand, 9809 - 10056
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  9809 cactaccacaattttggcttttaatagcacaattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttacag 9908  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    ||||||||||||||||| || |||||| | |  | ||||||||| |||   || ||||||||||||||||  || |||||||||||||||| ||||||||    
T  9909 aaagcgctaagaaaaacatgataaaaactaggttagatagcgctttttcataaacgctattgttttggtttgcactaatagcgcttttcaggaaacgcta 10008  T
Q  293 tagttggagggggtatagatagcgctt-ttacaaacgctattgtttgg 339  Q
    | |||  ||||||||||||||||| || | ||||||||||||||||||    
T  10009 ttgttaaagggggtatagatagcgtttctcacaaacgctattgtttgg 10056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 93 - 339
Target Start/End: Complemental strand, 15103195 - 15102948
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  15103195 cactaccacaattttggcttttaatagcacaattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttacag 15103096  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    ||||||||||||||||| || |||||| | |  | ||||||||| |||   || ||||||||||||||||  || |||||||||||||||| ||||||||    
T  15103095 aaagcgctaagaaaaacatgataaaaactaggttagatagcgctttttcataaacgctattgttttggtttgcactaatagcgcttttcaggaaacgcta 15102996  T
Q  293 tagttggagggggtatagatagcgctt-ttacaaacgctattgtttgg 339  Q
    | |||  ||||||||||||||||| || | ||||||||||||||||||    
T  15102995 ttgttaaagggggtatagatagcgtttctcacaaacgctattgtttgg 15102948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 93 - 351
Target Start/End: Complemental strand, 13372031 - 13371772
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||| || || ||||| |||||||||||||||||  || |||||||||||||  ||| |||    
T  13372031 cactaccacaattttggtttttaatagcataattttaatagcgcttttgaataaacgctattaaaaatgcaacttatggacctgttatagcggttttcag 13371932  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    ||||||||||||||||| ||||||||| |||  | ||||||||| || |  ||  |||||| ||||||||  || |||||||||||||  | | ||||||    
T  13371931 aaagcgctaagaaaaacatgttaaaaactgggttagatagcgcttttctataaaagctattattttggtttgcactaatagcgcttttttgcagacgcta 13371832  T
Q  293 tagttggagggggtatagatagcgctttt-acaaacgctattgtttgg-ctttatgaaaat 351  Q
    | ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  13371831 ttgttggagggggtatagatagcgcttttcacaaacgcta-tgtttggcctttatgaaaat 13371772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 90 - 219
Target Start/End: Original strand, 20129438 - 20129567
Alignment:
Q  90 attcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttta 189  Q
    ||||||||||| |||||||||||||||||||||||||| |||||| ||| | |||||||||||||||||||||||   ||||||||||||||||||| |     
T  20129438 attcactaccataattttggcttttaatagcacaattttaatagcttttatagataaatgctattaaaaatgcaaattatagacctgttatagcactctt 20129537  T
Q  190 cagaaagcgctaagaaaaacttgttaaaaa 219  Q
    ||||||||| ||| |||||||||| |||||    
T  20129538 cagaaagcgttaaaaaaaacttgtaaaaaa 20129567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 129 - 336
Target Start/End: Original strand, 52613054 - 52613262
Alignment:
Q  129 aatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacagaaagcgctaagaaaaacttgttaaaaattggactgg 228  Q
    ||||||| |||||||||||||||||| ||||||| ||| | |||||||||||||||||||  |||||||||||||||||||  |||||||| | |  | |    
T  52613054 aatagcgcttctggataaatgctattgaaaatgccaccgagagacctgttatagcactttttagaaagcgctaagaaaaacacgttaaaaactaggttag 52613153  T
Q  229 atagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgctatagttggagggg-gtatagatagcgcttttacaaac 327  Q
    |||||||| ||  | || || |||| ||| | ||| ||   |||||||||||  | ||| ||||| |||||||||| ||||||||||| |||||| ||||    
T  52613154 atagcgcttttcggtaaacgatattatttcgtttctcaaagatagcgctttttggtaaatgctattgttggaggggtgtatagatagcacttttagaaac 52613253  T
Q  328 gctattgtt 336  Q
    |||||||||    
T  52613254 gctattgtt 52613262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 221
Target Start/End: Complemental strand, 15097439 - 15097310
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttaca 191  Q
    |||||| ||||||||||| ||||||||||| || || ||| ||  || ||||||||||||||| |||| || ||||| ||| |||||||||||||||  |    
T  15097439 tcactatcacaattttggtttttaatagcataagtttaatggctcttatggataaatgctattgaaaacgccacccacagatctgttatagcacttttta 15097340  T
Q  192 gaaagcgctaagaaaaacttgttaaaaatt 221  Q
    ||||| |||||||||||| |||||||||||    
T  15097339 gaaagggctaagaaaaacatgttaaaaatt 15097310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 298
Target Start/End: Complemental strand, 19911267 - 19911136
Alignment:
Q  167 catagacctgttatagcactttacagaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcaca 266  Q
    ||||||| ||||| |||||||| || ||  |||||| ||||||||||||||||||||  | |||| |||| || |  |||||||||| || ||||||| |    
T  19911267 catagacatgttagagcacttttcataatacgctaaaaaaaacttgttaaaaattgggttagataacgcttttgtataagcgctattattctggttcata 19911168  T
Q  267 ttaatagcgcttttcagaaaacgctatagttg 298  Q
     ||||||||||||| |||||||||||| ||||    
T  19911167 ctaatagcgctttttagaaaacgctattgttg 19911136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 27356700 - 27356629
Alignment:
Q  94 actaccacaattttggcttttaatagcacaatttcaatagcgtt-tctggataaatgctattaaaaatgcaac 165  Q
    ||||| ||||||||| ||||||||||||| | || ||||||||| ||| || ||| |||||||||||||||||    
T  27356700 actactacaattttgtcttttaatagcaccactttaatagcgttatctcga-aaacgctattaaaaatgcaac 27356629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 93 - 345
Target Start/End: Complemental strand, 17943317 - 17943064
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  17943317 cactaccacaattttggcttttaatagcattattttaatagcgtttctggataaatgctattaaaaatgcaactcatagacctgttatagcacttttcag 17943218  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    ||||||||||| |||||||||||||||||||| | ||||||||| ||    || ||||||| || | |||| ||||||||||||||||    ||||||||    
T  17943217 aaagcgctaaggaaaacttgttaaaaattggattagatagcgcttttcctgaaacgctattattattgttcgcattaatagcgctttttccgaaacgcta 17943118  T
Q  293 tagttggagggggtatagatagcgctt-ttacaaacgctattgtttggctttat 345  Q
    | ||||||||||||||||||||||||| | |||||||||||  || ||||||||    
T  17943117 ttgttggagggggtatagatagcgcttgtcacaaacgctatgtttgggctttat 17943064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 90 - 332
Target Start/End: Original strand, 32664371 - 32664614
Alignment:
Q  90 attcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttta 189  Q
    ||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||     
T  32664371 attcactaccacaattttggcttttaatagcattattttaatagcgtttctggataaatgctattaaaaatgcaactcataaacctgttatagcactttt 32664470  T
Q  190 cagaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacg 289  Q
    |||||||||||||| |||||||||||||||||||  | ||||||||| ||    || ||||||| || | |||  ||||||||||||||||    ||||     
T  32664471 cagaaagcgctaaggaaaacttgttaaaaattgggttagatagcgcttttcctgaaacgctattattattgtttgcattaatagcgctttttccgaaaca 32664570  T
Q  290 ctatagttggagggggtatagatagcgctt-ttacaaacgctat 332  Q
    |||| ||||||||||||||||||||||||| | |||||||||||    
T  32664571 ctattgttggagggggtatagatagcgcttgtcacaaacgctat 32664614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 93 - 332
Target Start/End: Complemental strand, 17010020 - 17009780
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||   ||||||||||||||||||| | |||    
T  17010020 cactaccacaattttggcttttaatagcacaattttaatagcgtttttggataaatgctattaaaaatgcaaattatagacctgttatagcactcttcag 17009921  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    |||||||||| |||| ||||||||||| |||  | ||||||||| || |  ||| |||||| || | ||||  | ||||||| ||||| | ||| |||||    
T  17009920 aaagcgctaaaaaaagcttgttaaaaactgggttagatagcgcttttctataagtgctattattcttgttcgtactaatagcacttttaaaaaagcgcta 17009821  T
Q  293 tagttggagggggtatagatagcgctttt-acaaacgctat 332  Q
    | |||| ||||||||||||||||| |||| |||||||||||    
T  17009820 ttgttgaagggggtatagatagcgtttttcacaaacgctat 17009780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 93 - 351
Target Start/End: Original strand, 20027662 - 20027922
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    ||||||||||||||||||||||||||||  ||||| |||||||||| || |||||||||||||||||||||||  |||| ||||||| |||  ||| ||     
T  20027662 cactaccacaattttggcttttaatagcgtaattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagtcctgttaaagctgttttcaa 20027761  T
Q  193 aaagcgctaagaaaaacttgtt-aaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgct 291  Q
    ||||||| ||||||||| |||| ||||| |||  | ||||||||| ||||  |||||||||| ||||||||  || |||||||||||||  | || ||||    
T  20027762 aaagcgccaagaaaaacatgttaaaaaactgggttagatagcgcttttttataagcgctattattttggtttgcactaatagcgcttttttgcaagcgct 20027861  T
Q  292 atagttggagggggtatagatagcgctttt-acaaacgctattgtttgg-ctttatgaaaat 351  Q
    || ||||||||||||||||||||||||||| ||||||| || ||||||| ||||||||||||    
T  20027862 attgttggagggggtatagatagcgcttttcacaaacgtta-tgtttggcctttatgaaaat 20027922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 93 - 219
Target Start/End: Original strand, 8376066 - 8376192
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||| || |||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  8376066 cactaccacaattttggattttaatagcacaattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagacctgttatagcacttttcag 8376165  T
Q  193 aaagcgctaagaaaaacttgttaaaaa 219  Q
    ||||||||||||||||| |||||||||    
T  8376166 aaagcgctaagaaaaacatgttaaaaa 8376192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 8376341 - 8376231
Alignment:
Q  99 cacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacagaaagcg 198  Q
    |||||| ||||||||||||||||||| || ||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  8376341 cacaatattggcttttaatagcacaagtttaatagcgcttctagataaatgctattgaaaatgcaacccatagacctgttatagcacttttcagaaagcg 8376242  T
Q  199 ctaagaaaaac 209  Q
    |||||||||||    
T  8376241 ctaagaaaaac 8376231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 36516940 - 36517067
Alignment:
Q  91 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttac 190  Q
    |||||||| ||||||||||| |||||||||||||||| ||||||  || |||||||||||||||||||| ||||| ||||||||||||||||||||||      
T  36516940 ttcactactacaattttggcctttaatagcacaattttaatagcacttatggataaatgctattaaaaaggcaactcatagacctgttatagcactttca 36517039  T
Q  191 agaaagcgctaagaaaaacttgttaaaa 218  Q
    | |||||||||||||||| |||||||||    
T  36517040 aaaaagcgctaagaaaaatttgttaaaa 36517067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 91 - 316
Target Start/End: Original strand, 14481690 - 14481914
Alignment:
Q  91 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttac 190  Q
    |||| ||||||||||||||| |||||||||||||||| |||||||||| |  ||||| |||||||||||| |||   |||||||| |||||||||| | |    
T  14481690 ttcattaccacaattttggcctttaatagcacaattttaatagcgtttgtacataaaagctattaaaaatacaaattatagacctattatagcactctgc 14481789  T
Q  191 agaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgc 290  Q
    |||||||||||| ||||| |||| ||||| |||  | ||||||||| || |  |||||| ||| || | ||||||| ||||||  |||||  | ||||||    
T  14481790 agaaagcgctaa-aaaaaattgtaaaaaactgggttagatagcgcttttctataagcgccattattcttgttcacactaatagtacttttagggaaacgc 14481888  T
Q  291 tatagttggagggggtatagatagcg 316  Q
    | | ||||  ||||||||||||||||    
T  14481889 tgttgttgaggggggtatagatagcg 14481914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 31308780 - 31308876
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttt 188  Q
    ||||||| ||||||||||||||||||||| ||| || |||||||||| |  ||||| |||||| |||| ||||| || | ||||  |||||||||||    
T  31308780 tcactactacaattttggcttttaatagcgcaaatttaatagcgtttttacataaacgctattgaaaaggcaacacagataccttctatagcacttt 31308876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 10497240 - 10497276
Alignment:
Q  129 aatagcgtttctggataaatgctattaaaaatgcaac 165  Q
    ||||||| || ||||||||||||||||||||||||||    
T  10497240 aatagcgcttatggataaatgctattaaaaatgcaac 10497276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 92 - 351
Target Start/End: Complemental strand, 23925875 - 23925615
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttaca 191  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||  ||||||||||||||| | |||||||    
T  23925875 tcactaccacaattttggcttttaatagcacaattttaatagcgtttatggataaatgctatgaaaaatgcaaatcatagacctgttataacgctttaca 23925776  T
Q  192 gaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgct 291  Q
     |||||||||||||||| |||||||||| |||  | ||||||||| || |  |||||||||| || | ||||||| ||||||| ||||| ||||||||||    
T  23925775 taaagcgctaagaaaaatttgttaaaaactgggttagatagcgcttttgtataagcgctattattctagttcacactaatagcactttttagaaaacgct 23925676  T
Q  292 atagttggagggggtatagatagcgctttt-acaaacgctattgtttg-gctttatgaaaat 351  Q
    || ||||  ||||||||||||||||||||| |||||||||| |||||| |||||||||||||    
T  23925675 attgttgatgggggtatagatagcgcttttcacaaacgcta-tgtttgtgctttatgaaaat 23925615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 93 - 351
Target Start/End: Original strand, 22938857 - 22939116
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    |||||||||||||| |||||||||||||||||||| |||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||| |||    
T  22938857 cactaccacaatttgggcttttaatagcacaattttaatagcatttttggataaacgctattaaaaatgcaacccataggcctgttatagcactttgcag 22938956  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    ||||||||||||||||||| || |||| |||  | ||||||||| ||  || |||||||||  ||| |||  || |||||||| |||  || ||||||||    
T  22938957 aaagcgctaagaaaaactttttgaaaaatgggttagatagcgcttttcggcgagcgctattagttttgttggcactaatagcgttttctagcaaacgcta 22939056  T
Q  293 tagttggagggggtatagatagcgctttt-acaaacgctattgtttggctttatgaaaat 351  Q
    | |||||||||||||||||||||||||||  ||||||||||  ||  |||||||||||||    
T  22939057 ttgttggagggggtatagatagcgcttttctcaaacgctatctttgtgctttatgaaaat 22939116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 93 - 332
Target Start/End: Complemental strand, 24501782 - 24501542
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||   ||||||||||||||||||  | |||    
T  24501782 cactaccacaattttggcttttaatagcacaattttaatagcgtttttggataaatgctattaaaaatgcaaattatagacctgttatagcacccttcag 24501683  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    ||| |||||| |||| ||||||||||| |||  | ||||||||| || |  ||| |||||| || | ||||  | ||||||||||||| |||||||||||    
T  24501682 aaaacgctaaaaaaagcttgttaaaaactgggttagatagcgcttttctataagtgctattattcttgttcgtactaatagcgcttttaagaaaacgcta 24501583  T
Q  293 tagttggagggggtatagatagcgctttt-acaaacgctat 332  Q
    | |||| ||||||||||||||||| |||| |||||||||||    
T  24501582 ttgttgaagggggtatagatagcgtttttcacaaacgctat 24501542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 92 - 321
Target Start/End: Complemental strand, 27289173 - 27288944
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttaca 191  Q
    |||||||||||||||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||| |||||| |||||||||||||||| ||    
T  27289173 tcactaccacaattttggcttttaatagcacaattttaataacatttttggataaatgctattaaaaatgcaatccataggcctgttatagcactttgca 27289074  T
Q  192 gaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgct 291  Q
     ||||||||||||||||||| ||||||| |||  | ||||||||| ||  || |||||||||  ||| |||  || |||||||  |||  || |||||||    
T  27289073 aaaagcgctaagaaaaactttttaaaaaatgggttagatagcgcttttcggcgagcgctattagttttgtttgcactaatagcattttctagcaaacgct 27288974  T
Q  292 atagttggagggggtatagatagcgctttt 321  Q
    || ||||||| |||||||||||||| ||||    
T  27288973 attgttggagagggtatagatagcgttttt 27288944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 217
Target Start/End: Complemental strand, 21740443 - 21740320
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttaca 191  Q
    |||||| |||||||||||||||||||||||  |||| |||||| ||| || |||| |||||||||||||||||   ||||||||||||||||||||| ||    
T  21740443 tcactatcacaattttggcttttaatagca--attttaatagcatttttgaataactgctattaaaaatgcaatttatagacctgttatagcacttttca 21740346  T
Q  192 gaaagcgctaagaaaaacttgttaaa 217  Q
    ||||||| |||||||||| |||||||    
T  21740345 gaaagcgttaagaaaaacatgttaaa 21740320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 92 - 349
Target Start/End: Complemental strand, 11513171 - 11512900
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgtta----------ta 181  Q
    ||||||||||||||||   ||| ||||||| ||||| ||||| | |||| ||||||| |||||||||||||||| ||||||| |||||          ||    
T  11513171 tcactaccacaattttaaatttcaatagcagaattttaatagagcttctagataaatactattaaaaatgcaacgcatagacatgttataacacttttta 11513072  T
Q  182 gcactttacagaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttc 281  Q
    |||||||  ||||||||||||||||||| ||||||||| |||  | ||| |  || || | ||| | |||||  |||||| | |||||||||||||||||    
T  11513071 gcactttttagaaagcgctaagaaaaacatgttaaaaactgggttagatggtacttttctacaaaccctatt-atttggtactcattaatagcgcttttc 11512973  T
Q  282 agaaaacgctatagttggagg--gggtatagatagcgctttt--acaaacgctattgtt-tggctttatgaaa 349  Q
    || ||||||||| ||||||||  ||||||| |||| | ||||  |||||| |||||||| |||||||||||||    
T  11512972 aggaaacgctattgttggagggagggtataaatagtgtttttacacaaacactattgttctggctttatgaaa 11512900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 92 - 349
Target Start/End: Complemental strand, 11506448 - 11506177
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttt--- 188  Q
    ||||||||||||||||   ||| ||||||| ||||| ||||| | |||| ||||||| |||||||||||||||| ||||||| ||||||| ||||||       
T  11506448 tcactaccacaattttaaatttcaatagcagaattttaatagagcttctagataaatactattaaaaatgcaacgcatagacatgttataacacttttta 11506349  T
Q  189 --ac-----agaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttc 281  Q
      ||     ||||||||||||||||||| ||||||||| | |  | ||| |  || || | ||| | |||||  |||||| | |||||||||||||||||    
T  11506348 ggactttttagaaagcgctaagaaaaacatgttaaaaactaggttagatggtacttttctacaaaccctatt-atttggtactcattaatagcgcttttc 11506250  T
Q  282 agaaaacgctatagttggagg--gggtatagatagcgctttt--acaaacgctattgtt-tggctttatgaaa 349  Q
    || ||||||||| ||||||||  ||||||| |||| | ||||  ||||||||||||||| |||||||||||||    
T  11506249 aggaaacgctattgttggagggagggtataaatagtgtttttacacaaacgctattgttctggctttatgaaa 11506177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 155
Target Start/End: Complemental strand, 14154195 - 14154132
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctatta 155  Q
    ||||||||||||||||||||||| ||||||  |||| ||||||||||||  ||||| |||||||    
T  14154195 tcactaccacaattttggctttttatagcagtattttaatagcgtttctacataaacgctatta 14154132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 333
Target Start/End: Complemental strand, 21739284 - 21739197
Alignment:
Q  247 cgctattgttttggttcacattaatagcgcttttcagaaaacgctatagttggagggggtatagatagcgctttt-acaaacgctatt 333  Q
    ||||||| ||||||||  || ||||| ||| |||  | ||||||||| ||||||||||||||||||||| ||||| ||||||||||||    
T  21739284 cgctattattttggtttgcactaatatcgcctttttgtaaacgctattgttggagggggtatagatagctcttttcacaaacgctatt 21739197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 20571462 - 20571534
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaac 165  Q
    |||||| ||||||||||||||| ||||||  |||| |||||||||| |  ||||| ||||||| ||| |||||    
T  20571462 cactactacaattttggctttttatagcagtattttaatagcgtttttacataaacgctattataaaggcaac 20571534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 8e-65; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 94 - 338
Target Start/End: Original strand, 36478701 - 36478946
Alignment:
Q  94 actaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacaga 193  Q
    |||||||||||||||||||||||||||| ||||| || ||| ||| |||||||||||||||||| ||||||| |||||| || |||||||||||| ||||    
T  36478701 actaccacaattttggcttttaatagcataattttaacagcttttatggataaatgctattaaagatgcaactcatagatctattatagcacttttcaga 36478800  T
Q  194 aagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgctat 293  Q
    ||||||||| ||| || ||||||||| |||  | ||||||  | ||||| || ||||||| ||||||||| || ||||||||||||| ||||||||||||    
T  36478801 aagcgctaaaaaagacatgttaaaaactgggttagatagcatttttttgtaaacgctattattttggttcgcactaatagcgctttttagaaaacgctat 36478900  T
Q  294 agttggagggggtatagatagcgcttttac-aaacgctattgtttg 338  Q
     |||||||||||||||||||||| |||||| |||||||||||||||    
T  36478901 tgttggagggggtatagatagcgtttttacgaaacgctattgtttg 36478946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 94 - 351
Target Start/End: Original strand, 17176038 - 17176296
Alignment:
Q  94 actaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacaga 193  Q
    |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||    
T  17176038 actaccacaattttggcttttaatagcataattttaatagcgtttctggataaatgctattaaaaatgcaactcatagacctattatagcacttttcaga 17176137  T
Q  194 aagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgc-ttttcagaaaacgcta 292  Q
    |||||||||| |||||||||||||||||||  | ||||||||| |     ||  |||||| || | |||  || ||||| ||| ||||| ||||| ||||    
T  17176138 aagcgctaaggaaaacttgttaaaaattgggttagatagcgctttcccataaatgctattattgttgtttgcactaataacgctttttccgaaaa-gcta 17176236  T
Q  293 tagttggagggggtatagatagcgctttt-acaaacgctattgtttggctttatgaaaat 351  Q
    | |||||| |||||||||||||||||||| |||||||||||  || |||||||| |||||    
T  17176237 ttgttggaaggggtatagatagcgcttttcacaaacgctatgtttgggctttattaaaat 17176296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 29254138 - 29254196
Alignment:
Q  32 gaatgattaatatgaaagcaaacattaaacaccgatggatcacacacacaaccaaataa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29254138 gaatgattaatatgaaagcaaacattaaacaccgatggatcacacacacaaccaaataa 29254196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 41944033 - 41944116
Alignment:
Q  95 ctaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgtt 178  Q
    ||||||||||||| ||||||||||||||||||| |||| ||||| || ||||||||||||||| | ||||| ||||||||||||    
T  41944033 ctaccacaattttagcttttaatagcacaattttaataacgtttatgaataaatgctattaaataggcaactcatagacctgtt 41944116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0089 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0089
Description:

Target: scaffold0089; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 92 - 351
Target Start/End: Original strand, 32775 - 33035
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttaca 191  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||  ||||| ||||||||||  ||| ||    
T  32775 tcactaccacaattttggcttttaatagcataattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagatctgttatagcggttttca 32874  T
Q  192 gaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgct 291  Q
    |||||||||||||||||| ||||||||| |||  | ||||||||| || |  || ||||||| ||||||||  || |||||||||||||  | | |||||    
T  32875 gaaagcgctaagaaaaacatgttaaaaactgggttagatagcgcttttctataaacgctattattttggtttgcactaatagcgcttttttgcagacgct 32974  T
Q  292 atagttggagggggtatagatagcgctttt-acaaacgctattgtttgg-ctttatgaaaat 351  Q
    || ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  32975 attgttggagggggtatagatagcgcttttcacaaacgcta-tgtttggcctttatgaaaat 33035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 90 - 351
Target Start/End: Complemental strand, 22474623 - 22474362
Alignment:
Q  90 attcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttta 189  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||   |||||||| |||||||||| |     
T  22474623 attcactaccacaattttggcttttaatagcacaattttaatagcgtttctgcataaaagctattaaaaatgtaaattatagacctattatagcactctg 22474524  T
Q  190 cagaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacg 289  Q
    ||||||||||||| |||||||||| |||||||||  | ||||||||| || |  |||||||||| || | |||| || |||||||||||||  | ||||     
T  22474523 cagaaagcgctaaaaaaaacttgtaaaaaattgggttagatagcgcttttctataagcgctattattcttgttcgcactaatagcgcttttggggaaaca 22474424  T
Q  290 ctatagttggagggggtatagatagcgctttt-acaaacgctattgtttggctttatgaaaat 351  Q
    |||| ||| |||||||||||||||||| ||||  |||||||||| ||| ||||| ||||||||    
T  22474423 ctattgtt-gagggggtatagatagcgtttttctcaaacgctatggttgggcttaatgaaaat 22474362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 91 - 332
Target Start/End: Complemental strand, 16729823 - 16729581
Alignment:
Q  91 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttac 190  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||   ||||||||||||||||||| | |    
T  16729823 ttcactaccacaattttggcttttaatagcacaattttaatagcgtttttggataaaagctattaaaaatgcaaattatagacctgttatagcactcttc 16729724  T
Q  191 agaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgc 290  Q
    |||||||||||| |||| ||||| ||||| |||  |  |||||||| || |  ||| | |||| || | ||||  | ||||||||||||| ||||||| |    
T  16729723 agaaagcgctaaaaaaagcttgtgaaaaactgggttacatagcgcttttctataagtgatattattcttgttcgtactaatagcgcttttaagaaaacac 16729624  T
Q  291 tatagttggagggggtatagatagcgctttt-acaaacgctat 332  Q
    ||| |||| ||||||||||||||||| |||| |||||||||||    
T  16729623 tattgttgaagggggtatagatagcgtttttcacaaacgctat 16729581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 91 - 202
Target Start/End: Complemental strand, 33292526 - 33292415
Alignment:
Q  91 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttac 190  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||   ||||| ||||||||||||| | |    
T  33292526 ttcactaccacaattttggcttttaatagcacaattttaatagcgtttttggataaatgctattaaaaatgcaaattatagatctgttatagcactcttc 33292427  T
Q  191 agaaagcgctaa 202  Q
    ||||||||||||    
T  33292426 agaaagcgctaa 33292415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 94 - 219
Target Start/End: Original strand, 20511834 - 20511959
Alignment:
Q  94 actaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacaga 193  Q
    |||| ||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||||||||||||  ||||||||||||||||  ||| ||||    
T  20511834 actaacacaattttggcttttaatagcataattttaatagcgtttttgaataaatgctattaaaaatgcaacttatagacctgttatagcggttttcaga 20511933  T
Q  194 aagcgctaagaaaaacttgttaaaaa 219  Q
    |||| ||||||||||| |||||||||    
T  20511934 aagcactaagaaaaacatgttaaaaa 20511959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 28247598 - 28247671
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaac 165  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||    
T  28247598 tcactactacaattttagcttttaatagcacaattttaatagcgtttctatataaatgctattaaaaaggcaac 28247671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 183
Target Start/End: Original strand, 14267287 - 14267374
Alignment:
Q  96 taccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagc 183  Q
    ||||| |||||||||||||||||||||||||| |||||| |||||  ||||| ||||||  |||  || ||||  |||||||||||||    
T  14267287 taccataattttggcttttaatagcacaattttaatagcttttctccataaaagctattgtaaagacatcccactgacctgttatagc 14267374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 93 - 314
Target Start/End: Original strand, 6813846 - 6814065
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |||| |||    
T  6813846 cactaccacaattttggcttttaatagcgcaattttaatagcgtttatggataaaagctattaaaaatgcaactcataggcctgttatagcgcttttcag 6813945  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    ||||||||||||||||| |||||||||||||  | ||||||||| |  |  || | ||||| |||||||||  | |||||||||||||||| ||||||||    
T  6813946 aaagcgctaagaaaaacatgttaaaaattgggttagatagcgctttcctataaacactattattttggttcggactaatagcgcttttcag-aaacgcta 6814044  T
Q  293 tagttggagggggtatagatag 314  Q
    | ||||| ||||||||||||||    
T  6814045 ttgttgg-gggggtatagatag 6814065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 90 - 205
Target Start/End: Original strand, 16230243 - 16230358
Alignment:
Q  90 attcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttta 189  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || || ||||||||||||||||     
T  16230243 attcactaccacaattttggcttttaatagcacaattttaatagcgtttctagataaatgctattaaaaatgcaactcacaggcctgttatagcactttg 16230342  T
Q  190 cagaaagcgctaagaa 205  Q
    |||||||||| |||||    
T  16230343 cagaaagcgccaagaa 16230358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 25043353 - 25043130
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    |||||||||||||||||  ||||||||||||| || ||||||||||||  ||||| ||||||| ||||||||   ||||| || ||||||||||   |||    
T  25043353 cactaccacaattttggtctttaatagcacaaatttaatagcgtttctacataaacgctattacaaatgcaaattatagatctattatagcactccgcag 25043254  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    |||||||||| |||||||||| |||   |||  | ||||||||| || |  |||||||||| || | ||||||| |||||||||||||  | ||||||||    
T  25043253 aaagcgctaaaaaaaacttgtaaaaccctgggttagatagcgcttttctttaagcgctattattcttgttcacactaatagcgcttttagggaaacgcta 25043154  T
Q  293 tagttggagggggtatagatagcg 316  Q
    | |||   ||||||||||||||||    
T  25043153 ttgtttaggggggtatagatagcg 25043130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 4685842 - 4685745
Alignment:
Q  91 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttt 188  Q
    |||||||| |||||||||| |||||||||| ||| || |||||||||||   ||||| ||| ||||||||| ||  || |||| ||||||||| ||||    
T  4685842 ttcactactacaattttggtttttaatagcgcaaatttaatagcgtttcaacataaacgctgttaaaaatgtaaaacacagacatgttatagctcttt 4685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 14128592 - 14128651
Alignment:
Q  95 ctaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctatt 154  Q
    |||| |||||||| | |||||||||| |||||| ||||||||||||  ||||||||||||    
T  14128592 ctactacaattttagtttttaatagcgcaattttaatagcgtttctatataaatgctatt 14128651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 321
Target Start/End: Original strand, 16232355 - 16232431
Alignment:
Q  245 agcgctattgttttggttcacattaatagcgcttttcagaaaacgctatagttggagggggtatagatagcgctttt 321  Q
    ||||||||| |||| |||  || |||||||  |||| || ||||| ||| ||||||| |||||||||||||||||||    
T  16232355 agcgctattatttttgtttgcactaatagcattttttagcaaacgttattgttggagagggtatagatagcgctttt 16232431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 93 - 321
Target Start/End: Complemental strand, 12630289 - 12630062
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttacag 192  Q
    |||||||||||||||| |||||||||||||||||| |||||||||| ||||||| |||||||||||||||||   ||||||||||||||||||| | |||    
T  12630289 cactaccacaattttgacttttaatagcacaattttaatagcgtttttggataagtgctattaaaaatgcaaattatagacctgttatagcactcttcag 12630190  T
Q  193 aaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgcta 292  Q
    |||  ||||| |||||||||| |||||||||  | ||||||||| || |  ||| |||||| || | |||| || ||||||||||||| || ||||||||    
T  12630189 aaaatgctaaaaaaaacttgtaaaaaattgggttagatagcgcttttctataagtgctattattcttgttcgcactaatagcgctttt-aggaaacgcta 12630091  T
Q  293 tagttggagggggtatagatagcgctttt 321  Q
    | |||| ||||||||||||||||||||||    
T  12630090 ttgttgaagggggtatagatagcgctttt 12630062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 91 - 316
Target Start/End: Complemental strand, 33737171 - 33736946
Alignment:
Q  91 ttcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcactttac 190  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||  ||||||||||||||||||||||   |||||||| |||||||||| | |    
T  33737171 ttcactaccacaattttggcctttaatagcacaattttaatagcgtttctacataaatgctattaaaaatgcaaattatagacctattatagcactctgc 33737072  T
Q  191 agaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacgc 290  Q
    |||||||||||| |||||||||| ||||| |||  | ||||||||| || |  |||||||||| || | ||||||| |||||||||||||  | |||| |    
T  33737071 agaaagcgctaaaaaaaacttgtaaaaaactgggttagatagcgcttttctataagcgctattattcttgttcacactaatagcgcttttagggaaacac 33736972  T
Q  291 tatagttggagggggtatagatagcg 316  Q
    ||| ||||  ||||||||||||||||    
T  33736971 tattgttgaggggggtatagatagcg 33736946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 90 - 321
Target Start/End: Original strand, 22197913 - 22198142
Alignment:
Q  90 attcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttta 189  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||| || |||||||| |||||||||||  |||| ||||||||||||||||||||||     
T  22197913 attcactaccacaattttggctttaaatagcacaattttaatagcggttatggataaacgctattaaaaa-acaacgcatagacctgttatagcactttt 22198011  T
Q  190 cagaaagcgctaagaaaaacttgttaaaaattggactggatagcgctcttttgcaagcgctattgttttggttcacattaatagcgcttttcagaaaacg 289  Q
     ||||||||||||||||||| ||||||||| | |  | |||||| || | ||   | ||||||| ||||||||  || |||||||||||||||| |||||    
T  22198012 aagaaagcgctaagaaaaacatgttaaaaactaggttagatagcactttcttatgaacgctattattttggtttgcactaatagcgcttttcag-aaacg 22198110  T
Q  290 ctatagttggagggggtatagatagcgctttt 321  Q
    |||| |||||| ||| ||||||||||||||||    
T  22198111 ctattgttggacgggttatagatagcgctttt 22198142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 5562640 - 5562545
Alignment:
Q  93 cactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaacccatagacctgttatagcacttt 188  Q
    |||||| ||||||||||||||||||||| ||| || |||||||||| |  ||||| ||||||||||| ||||| || | ||||  |||||||||||    
T  5562640 cactactacaattttggcttttaatagcgcaaatttaatagcgtttttacataaacgctattaaaaaggcaacacagataccttctatagcacttt 5562545  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 32718548 - 32718510
Alignment:
Q  28 cactgaatgattaatatgaaagcaaacattaaacaccga 66  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  32718548 cactcaatgattaatgtgaaagcaaacattaaacaccga 32718510  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 32724953 - 32724915
Alignment:
Q  28 cactgaatgattaatatgaaagcaaacattaaacaccga 66  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  32724953 cactcaatgattaatgtgaaagcaaacattaaacaccga 32724915  T

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Target: scaffold0038 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 47760 - 47833
Alignment:
Q  92 tcactaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctattaaaaatgcaac 165  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||||||  ||||||||||||||||| |||||    
T  47760 tcactactacaattttagcttttaatagcacaattttaatagcgtttctatataaatgctattaaaaaggcaac 47833  T

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Target: scaffold0665 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 2794 - 2853
Alignment:
Q  95 ctaccacaattttggcttttaatagcacaatttcaatagcgtttctggataaatgctatt 154  Q
    |||| |||||||| | |||||||||| |||||| ||||||||||||  ||||||||||||    
T  2794 ctactacaattttagtttttaatagcgcaattttaatagcgtttctatataaatgctatt 2853  T

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