View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12608_high_7 (Length: 276)
Name: NF12608_high_7
Description: NF12608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12608_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 27 - 266
Target Start/End: Original strand, 22043473 - 22043714
Alignment:
| Q |
27 |
tcatgaggctctgatgcatggaagcagtggcaaggagagcctgaaccaagcaagaaatttattcnnnnnnnnn--gaaccaggcaagaaattaatggact |
124 |
Q |
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| T |
22043473 |
tcattaggctctgatgcatggaagcagtggcaaggagagccagaaccaagcaagaaatttattcaaaaaaaaaaagaaccaatcaagaaattaatggact |
22043572 |
T |
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| Q |
125 |
tgctcttacgcctagttttccttgttgatatacaagtaagactttaatttatatagatggataccggacacgacattgacactggcaagtggacaccaat |
224 |
Q |
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| T |
22043573 |
tgcacttacgcctagttttccttgttgatatacaagtaagactttaatttatatagatggataccggacacgacattgacactggcaagtgaacaacaat |
22043672 |
T |
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| Q |
225 |
aattatgtaagaatatagaagtgattgaatattgcgtctgtg |
266 |
Q |
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| T |
22043673 |
aattatttaagaatatagaagtgattgaatattgcgtctgtg |
22043714 |
T |
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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 175 - 266
Target Start/End: Complemental strand, 2423583 - 2423492
Alignment:
| Q |
175 |
atatagatggataccggacacgacattgacactggcaagtggacaccaataattatgtaagaatatagaagtgattgaatattgcgtctgtg |
266 |
Q |
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| T |
2423583 |
atataaatggataccagacacgacattgacactggctagtggacaccaataataatctaagaatatagaagtgattgaatattgcgtctgtg |
2423492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 100 - 177
Target Start/End: Complemental strand, 2423877 - 2423800
Alignment:
| Q |
100 |
gaaccaggcaagaaattaatggacttgctcttacgcctagttttccttgttgatatacaagtaagactttaatttata |
177 |
Q |
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| T |
2423877 |
gaaccaagcaagaaattaatggacttgctcctacgcctagttttccttgttgatatacaagtaaggctttaatttata |
2423800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 2423909 - 2423861
Alignment:
| Q |
37 |
ctgatgcatggaagcagtggcaaggagagcctgaaccaagcaagaaatt |
85 |
Q |
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| T |
2423909 |
ctgatgcatggaagcagtggcaaggagagccagaaccaagcaagaaatt |
2423861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 164
Target Start/End: Complemental strand, 7272089 - 7272053
Alignment:
| Q |
128 |
tcttacgcctagttttccttgttgatatacaagtaag |
164 |
Q |
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| T |
7272089 |
tcttacgcctagttttgcttgttgatatataagtaag |
7272053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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