View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12608_low_12 (Length: 244)
Name: NF12608_low_12
Description: NF12608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12608_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 35256625 - 35256850
Alignment:
| Q |
1 |
tagattcagttggccttcaggcgctacatatgaaggcgaattcaagactggtttcatggatggtgtaggaacatacacgggtattaatggtgagacatat |
100 |
Q |
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| T |
35256625 |
tagattcagttggccttcaggcgctacatatgaaggcgaattcaagactggtttcatggatggtgtaggaacatacacgggtattaatggtgagacatat |
35256724 |
T |
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| Q |
101 |
aagggacaatgggtgatgaatttaaaacatggtcatgggtataagagttatgtgaatggtgattggtatgaaggtgattggaggagaggggtgcaagatg |
200 |
Q |
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| T |
35256725 |
aaaggacaatgggtgatgaatttaaaacatggtcatgggtataagagttatgtgaatggtgattggtatgaaggtgattggaggagaggggtgcaagatg |
35256824 |
T |
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| Q |
201 |
gaaaagggaggtatgaatggagagat |
226 |
Q |
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| T |
35256825 |
gaaaagggaggtatgaatggagagat |
35256850 |
T |
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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 226
Target Start/End: Complemental strand, 19643083 - 19642886
Alignment:
| Q |
29 |
tatgaaggcgaattcaagactggtttcatggatggtgtaggaacatacacgggtattaatggtgagacatataagggacaatgggtgatgaatttaaaac |
128 |
Q |
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| T |
19643083 |
tatgaaggggagttcaagagtggttatatggatggaataggtgcatacacttctactaatggggatacttataaaggacaatgggtgatgaatttgaaac |
19642984 |
T |
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| Q |
129 |
atggtcatgggtataagagttatgtgaatggtgattggtatgaaggtgattggaggagaggggtgcaagatggaaaagggaggtatgaatggagagat |
226 |
Q |
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| T |
19642983 |
atggtcatggtgagacgagttattcgaatggagataagtatgagggagaatggagaagaggtttgcaggatggacaagggagatatgagtggaaagat |
19642886 |
T |
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