View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12608_low_2 (Length: 430)
Name: NF12608_low_2
Description: NF12608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12608_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 5e-72; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 18106909 - 18106723
Alignment:
| Q |
1 |
gaaacctataattgagttcatctaacattaaatctctggcatttactccaatttattcttgcaaatgacttacacaaggtatactatgatcaggctagaa |
100 |
Q |
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| T |
18106909 |
gaaacctataattgagttcatctaacattaaatctctggtatttactccaatttattcttgcaaatgacttacacaaggtatactatgattaggctagaa |
18106810 |
T |
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| Q |
101 |
gtaataagtnnnnnnncaagtctattgtgcataagcaaacaataatccaattctgctacccacacctaatacaccaaaccagtctatc |
188 |
Q |
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| T |
18106809 |
ataataagt-aaaaaacaagtctattgtgcataagcaagcaataatccaattcagttacccacacctaatacaccaaaccagtctatc |
18106723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 185 - 336
Target Start/End: Complemental strand, 18106703 - 18106531
Alignment:
| Q |
185 |
tatctttcttcattgatatattctaacaaagataaagcttcaattttgtagaaataatgcagtcaaatatgtgtatcaccaaaataataacactacta-- |
282 |
Q |
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| T |
18106703 |
tatcttttttctgtgatatattctaactaagataaagcttcaattttgtagaaataatgcagtcaaatatgtgtatcgccaaaataataatactactaac |
18106604 |
T |
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| Q |
283 |
-------------------acaaaagatagaactaactaagcatgaagcaacaaaacaataccataccaatca |
336 |
Q |
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| T |
18106603 |
aatatcaaggccgtctacgacaaaagatagaactaactaagcatgaagcaacaaaacaataccataccaatca |
18106531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 18106508 - 18106432
Alignment:
| Q |
332 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggc |
408 |
Q |
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| T |
18106508 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggc |
18106432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 332 - 408
Target Start/End: Complemental strand, 18097390 - 18097314
Alignment:
| Q |
332 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggc |
408 |
Q |
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| T |
18097390 |
aatcgtcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcattgatcaagtggc |
18097314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 332 - 408
Target Start/End: Original strand, 18138863 - 18138939
Alignment:
| Q |
332 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggc |
408 |
Q |
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| T |
18138863 |
aatcgtcattctgaagcaacaaaacaattttataactgacttctaacaaccaaactcacattcattgatcaagtggc |
18138939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 283
Target Start/End: Complemental strand, 37876180 - 37876140
Alignment:
| Q |
243 |
gcagtcaaatatgtgtatcaccaaaataataacactactaa |
283 |
Q |
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| T |
37876180 |
gcagtcaaatatgtgtataaccaaaataataacactactaa |
37876140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 37876119 - 37876069
Alignment:
| Q |
282 |
aacaaaagatagaactaactaagcatgaagc-aacaaaacaataccatacc |
331 |
Q |
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| T |
37876119 |
aacaaaagatagaactaactaagcatgaagcaaataaaccaataccatacc |
37876069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 23895501 - 23895541
Alignment:
| Q |
243 |
gcagtcaaatatgtgtatcaccaaaataataacactactaa |
283 |
Q |
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| T |
23895501 |
gcagtcaaatatgtgtataaccaaaataataacactactaa |
23895541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 23895562 - 23895612
Alignment:
| Q |
282 |
aacaaaagatagaactaactaagcatgaagc-aacaaaacaataccatacc |
331 |
Q |
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||||||||||||||||||||||||||||||| || ||| |||||||||||| |
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| T |
23895562 |
aacaaaagatagaactaactaagcatgaagcaaataaaccaataccatacc |
23895612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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