View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12608_low_3 (Length: 354)
Name: NF12608_low_3
Description: NF12608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12608_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 945584 - 945248
Alignment:
| Q |
1 |
actttgaccaactaatagttttcgaaattgaggaactataccaattattactccaaatatctgcatgaatatattcttaaatcaacatcacaatgtatct |
100 |
Q |
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| T |
945584 |
actttgaccaactagtagttttcgaaattgaggaactataccaattattactccaaacatctgcatgaatatattcttaaatcaacatcacaatgtatct |
945485 |
T |
|
| Q |
101 |
cttaagtttagtgtataataatcaacttgttagaagtttgtttaaagtagacattaacattaactcaagcatatcaaatgaacaattagtgctaggagtt |
200 |
Q |
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| T |
945484 |
cttaagtttagtgtataataatcaacttgtt-gaagtttgtttaaagtagacattaacattaactcaagcatatcaaatgaacaattagtgctaggagtt |
945386 |
T |
|
| Q |
201 |
aatttgaataaacttctctctaaacacttaagaaaaatttgtataccatttccttattacttgattaaaaaataatcagaaaactaatgagaaaacaata |
300 |
Q |
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| T |
945385 |
aatttgaataaacttctctctaaacacttaagaaaaatttgtataccatttccttattacttgattaaaaaataatcagaaaactaatgagaaaacaata |
945286 |
T |
|
| Q |
301 |
atagaattatggacataccgatccccacaatgcaggtg |
338 |
Q |
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| T |
945285 |
atagaattgtggacataccgatccccacaatgcaggtg |
945248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 47 - 338
Target Start/End: Complemental strand, 4098525 - 4098224
Alignment:
| Q |
47 |
attactccaaatatctgcatgaatatattcttaaatcaac-atcacaatgtatctcttaagtttagtgtataataatcaacttgttagaagtttgtttaa |
145 |
Q |
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| T |
4098525 |
attactccaaaaatctgcatgaatatattcttaaatcaaagatcacaatgtatctcttaagattagtgtataacaatcaactagtt-gaagtttgtttaa |
4098427 |
T |
|
| Q |
146 |
a-------gtagacattaacattaactcaagcatatcaaatgaacaattagtgctaggagttaatttgaataaacttctctctaaacacttaagaaaaat |
238 |
Q |
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| T |
4098426 |
actttaaagtagacgttaacattaactcaagcatatcaaatgaacaattagtgatgggagttagtttgaataaacttctctctaaacacttaagaaaaat |
4098327 |
T |
|
| Q |
239 |
ttgtatacca-tttccttattac-ttgattaaaaa-ataatcagaaaactaatgagaaaacaataatagaattatggacataccgatccccacaatgcag |
335 |
Q |
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|||||||||| |||||||||||| ||||||||||| | || ||||||||||| |||||| |||||||||| |||| ||||||||||||||||||||| |
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| T |
4098326 |
ttgtataccattttccttattactttgattaaaaataaaaaataaaaactaatgataaaacagtaatagaattgtggatataccgatccccacaatgcag |
4098227 |
T |
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| Q |
336 |
gtg |
338 |
Q |
| |
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||| |
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| T |
4098226 |
gtg |
4098224 |
T |
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