View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12608_low_5 (Length: 328)
Name: NF12608_low_5
Description: NF12608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12608_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 14 - 313
Target Start/End: Complemental strand, 37677353 - 37677054
Alignment:
| Q |
14 |
atgaacaataggaaacatggttactaaatagtgaagctcctaactcctaattattaaattactacacaatctccgttctgatagtagtttccaagctatg |
113 |
Q |
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| T |
37677353 |
atgaacaataggaaacatggttactaaatagtgaagctcctaactcctaattattaaattactacacaatctccgttctgatagtagcttccaaactatg |
37677254 |
T |
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| Q |
114 |
tagcactaacacttcatatataaggcgtttctgatgtcaaacacatgttagtgtccgatcgtgtcaatgtcgtgtccgctttgtgagtgtatagtggcct |
213 |
Q |
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| T |
37677253 |
tagcactaacacttcatatataaggcgtgtctgatgtcaaacacatgttagtgtccgatggtgtcaatgccgtgtcctctttgtgagtgtatagtggcct |
37677154 |
T |
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| Q |
214 |
agtcatgataaatatatagaaatgaaagtaagattaagaaaagcataaaaacctgaagagtgtcaatcaacttggctcgttcttcatcactagttggagg |
313 |
Q |
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| T |
37677153 |
agtcatgataaatatatagaaatgaaagtaagattaagaaaagcataaaaacctgaagagtgtcaatcaacttggctcgttcttcatcactagttggagg |
37677054 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 16742993 - 16742931
Alignment:
| Q |
109 |
ctatgtagcactaacacttcatatataaggcgtttctgatgtcaaacacatgttagtgtccga |
171 |
Q |
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| T |
16742993 |
ctatgtagcaccaacacttcatatcgaaggtgtgtctgatgtccaacccgtgttagtgtccga |
16742931 |
T |
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