View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12608_low_7 (Length: 288)
Name: NF12608_low_7
Description: NF12608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12608_low_7 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 35256348 - 35256635
Alignment:
| Q |
1 |
gtgcagtagctaaaaaacgtgccaatagtatatttggtcttggagcattagcaattacaaatgcagacgatgaagaaggcagccaccatcatgatgataa |
100 |
Q |
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| T |
35256348 |
gtgcagtagctaaaaaacgtgccaatagtatatttggtcttggagcattagcaattacaaatgcagacgatgaagaaggcagccaccaccatgatgataa |
35256447 |
T |
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| Q |
101 |
cgatgaaaatggaaaccaggtatttgaactatacaccgaagagaaggttctttccaatggtgattactatacaggacaatgggcagaaaattttccacat |
200 |
Q |
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| T |
35256448 |
cgatgaaaatggaaaccaggtatttgaactatacaccgaagagaaggttctttccaatggtgattactatacaggacaatgggcagaaaattttccacat |
35256547 |
T |
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| Q |
201 |
ggagaaggaaaatatctatggacggatgggtgcatgtacgttggacaatggttcaaaggaaaaacaaagggaaaaggtagattcagtt |
288 |
Q |
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| T |
35256548 |
ggagaaggaaaatatctatggacggatgggtgcatgtacgttggacaatggttcaaaggaaaaacaaagggaaaaggtagattcagtt |
35256635 |
T |
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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 274
Target Start/End: Complemental strand, 19643249 - 19643115
Alignment:
| Q |
140 |
agagaaggttctttccaatggtgattactatacaggacaatgggcagaaaattttccacatggagaaggaaaatatctatggacggatgggtgcatgtac |
239 |
Q |
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| T |
19643249 |
agagagggttctacccaatggagattactataaaggagaatgggctgataacttcccacatgggaaagggaagtacttatggacagatggatgtatatat |
19643150 |
T |
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| Q |
240 |
gttggacaatggttcaaaggaaaaacaaagggaaa |
274 |
Q |
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|||||| ||||||||||||||||||| | |||||| |
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| T |
19643149 |
gttggagaatggttcaaaggaaaaactatgggaaa |
19643115 |
T |
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