View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12608_low_9 (Length: 270)
Name: NF12608_low_9
Description: NF12608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12608_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 9194830 - 9195085
Alignment:
| Q |
1 |
tctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttatctgatgcagtagattacatcaatgagttaaaagcaaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9194830 |
tctatgctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttatctgatgcagtagattacatcaatgagttaaaagcaaagat |
9194929 |
T |
|
| Q |
101 |
tgaagatttaaaattagggcaacaaaagggatcgaaaaaggcaatgatgaaaacgatgaaaattgtcgataataatagtgcaacgacaacttcaattgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9194930 |
cgaagatttaaaattagggcaacaaaaggaatcgaaaaaggcgatgatgaaaacgatgaaaattgtcgataataatagtgcaacgacaacttcaattgtg |
9195029 |
T |
|
| Q |
201 |
gtagaccaaaacaaacctagttgtagtaagaatcttattgctttagagattgatgt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9195030 |
gtagaccaaaacaaacctagttgtagtaagaatcttattgctttagagattgatgt |
9195085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 6 - 211
Target Start/End: Complemental strand, 9213195 - 9212990
Alignment:
| Q |
6 |
gctttaagatctgtggttccaaacgtttcaaagatggataaagcttctttgttatctgatgcagtagattacatcaatgagttaaaagcaaagattgaag |
105 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
9213195 |
gctttaagatctgtggttccaaatgtttcaaagatggataaagcttctcttttatcagatgcagtggattacatcaatgagttaaaatcaaagattgaag |
9213096 |
T |
|
| Q |
106 |
atttaaaattagggcaacaaaagggatcgaaaaaggcaatgatgaaaacgatgaaaattgtcgataataatagtgcaacgacaacttcaattgtggtaga |
205 |
Q |
| |
|
||||| ||| || ||||||||||| ||||||||||| | |||| |||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
9213095 |
atttagaatcagtgcaacaaaaggaatcgaaaaaggtgaagatggaaacgatggaaattgtcgataataacagtgcaacgacaacttcaactgtggtaga |
9212996 |
T |
|
| Q |
206 |
ccaaaa |
211 |
Q |
| |
|
|||||| |
|
|
| T |
9212995 |
ccaaaa |
9212990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 17370997 - 17371053
Alignment:
| Q |
72 |
gattacatcaatgagttaaaagcaaagattgaagatttaaaattagggcaacaaaag |
128 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||| |
|
|
| T |
17370997 |
gattacatcaatgagttgaaagcaaagattgaaaatttagaattagtgcaacaaaag |
17371053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 24748746 - 24748802
Alignment:
| Q |
72 |
gattacatcaatgagttaaaagcaaagattgaagatttaaaattagggcaacaaaag |
128 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||| ||| || |||||||||| |
|
|
| T |
24748746 |
gattacatctatgagttgaaagcaaagattgaaaatttagaatcagtgcaacaaaag |
24748802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University