View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12609_high_4 (Length: 240)
Name: NF12609_high_4
Description: NF12609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12609_high_4 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 11676639 - 11676861
Alignment:
| Q |
18 |
attctagggttttagtttcatctagaacacccatcattgctcttcctttcggaataaatatcctagttctttgtcgcaattctaacagctttgatgccct |
117 |
Q |
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| T |
11676639 |
attctagggttctagtttcatctagaacacccatcattgctcttcctttcggaataaatatcctagttctttgtcgcaattctaacaactttgatgccct |
11676738 |
T |
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| Q |
118 |
aaatgtctgcagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagtgacctctccagaaaacatc |
217 |
Q |
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| T |
11676739 |
aaatgtctggagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagcgacctctccagaaaacatc |
11676838 |
T |
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| Q |
218 |
aagtccaaaacctcatgtgcctt |
240 |
Q |
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| T |
11676839 |
aagtccaaaacctcgtgtgcctt |
11676861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 11684376 - 11684598
Alignment:
| Q |
18 |
attctagggttttagtttcatctagaacacccatcattgctcttcctttcggaataaatatcctagttctttgtcgcaattctaacagctttgatgccct |
117 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11684376 |
attctagggttctagtttcatctagaacacccatcattgttcttcctttcggaataaatatcctagttctttgtcgcaattctaacaactttgatgccct |
11684475 |
T |
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| Q |
118 |
aaatgtctgcagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagtgacctctccagaaaacatc |
217 |
Q |
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| T |
11684476 |
aaatgtctggagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagcgacctctccagaaaacatc |
11684575 |
T |
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| Q |
218 |
aagtccaaaacctcatgtgcctt |
240 |
Q |
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| T |
11684576 |
aagtccaaaacctcgtgtgcctt |
11684598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 11629401 - 11629179
Alignment:
| Q |
18 |
attctagggttttagtttcatctagaacacccatcattgctcttcctttcggaataaatatcctagttctttgtcgcaattctaacagctttgatgccct |
117 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||| |||||||| || || || || ||||| |
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| T |
11629401 |
attctagggttctagtttcatctagaactcccatcattgctcttccttttggaataaatatcctagttttttgccgcaattccaaaagtttcgaggccct |
11629302 |
T |
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| Q |
118 |
aaatgtctgcagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagtgacctctccagaaaacatc |
217 |
Q |
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||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||| ||||| |
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| T |
11629301 |
aaatgtctgcagcatcattgaaagaaatggttcaacattaggcttgtaaccacaaataagcatctccttcagaatattagtgacctccccggaagacatc |
11629202 |
T |
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| Q |
218 |
aagtccaaaacctcatgtgcctt |
240 |
Q |
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| T |
11629201 |
aagtccaaaacctcgtgtgcctt |
11629179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 11638170 - 11637948
Alignment:
| Q |
18 |
attctagggttttagtttcatctagaacacccatcattgctcttcctttcggaataaatatcctagttctttgtcgcaattctaacagctttgatgccct |
117 |
Q |
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|||||| |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||| |||||||||||| |
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| T |
11638170 |
attctaaggttctagtttcatctagaactcccatcattgctcttccttttggaataaatatcctagttttttgtcgcaattccaacaactttgatgccct |
11638071 |
T |
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| Q |
118 |
aaatgtctgcagcatcattgaaagaaatggttctatattaggcttgtagccacaaataagcatatccttcagaatattagtgacctctccagaaaacatc |
217 |
Q |
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|||||||||||||||||||||||||||||| || | || ||||||||||||||| |||||||| ||||| |||||||||||||| || || ||| ||||| |
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| T |
11638070 |
aaatgtctgcagcatcattgaaagaaatggctcaacatcaggcttgtagccacagataagcatctccttgagaatattagtgacttcaccggaacacatc |
11637971 |
T |
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| Q |
218 |
aagtccaaaacctcatgtgcctt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
11637970 |
aagtccaaaacctcatgtgcctt |
11637948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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