View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12609_high_5 (Length: 220)
Name: NF12609_high_5
Description: NF12609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12609_high_5 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 43798234 - 43798015
Alignment:
| Q |
1 |
tcaataaaacatttgttattggcacccataggccttctgtagagatttggtcttttgatccgaatggtggagtcacggtagttgcttgtggaacaatttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43798234 |
tcaataaaacatttgttattggcacccataggccttctgtagagatttggtcttttgatccgaatggtggagtcacggtagttgcttgtggaacaatttc |
43798135 |
T |
|
| Q |
101 |
attaaaaagtacagcggggactgctaaaagtttttgcatacctcaagatgtacgactcgtgtttgttgataaatattatgttcttgccggattgcggaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43798134 |
attaaaaagtacagcggggactgctaaaagtttttgcatacctcaagatgtacgactcgtgtttgttgataaatattatgttcttgccggattgcggaat |
43798035 |
T |
|
| Q |
201 |
ggaatgctccttcgcattga |
220 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
43798034 |
ggaatgctccttcgctttga |
43798015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 220
Target Start/End: Original strand, 10295115 - 10295202
Alignment:
| Q |
133 |
tttgcatacctcaagatgtacgactcgtgtttgttgataaatattatgttcttgccggattgcggaatggaatgctccttcgcattga |
220 |
Q |
| |
|
|||| |||||||||||||||| || || ||||||| ||| |||||||||||||| |||||| ||| |||||||| |||||| |||| |
|
|
| T |
10295115 |
tttgtatacctcaagatgtacaccttgtatttgttggtaagtattatgttcttgctggattgaagaacggaatgcttcttcgctttga |
10295202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 10295012 - 10295057
Alignment:
| Q |
12 |
tttgttattggcacccataggccttctgtagagatttggtcttttg |
57 |
Q |
| |
|
|||||||||||||| |||||||||||||| || |||||||||||| |
|
|
| T |
10295012 |
tttgttattggcacacataggccttctgtggaactttggtcttttg |
10295057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University