View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12609_low_2 (Length: 402)
Name: NF12609_low_2
Description: NF12609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12609_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Complemental strand, 34815285 - 34814912
Alignment:
| Q |
15 |
cttttaatatcctatgcggttcagctaaatgaagacatgttatttagtattgatttttctttccatgatattcttaactgaaggtttgataatatgtttc |
114 |
Q |
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| T |
34815285 |
cttttaatatcctatgcggttcagctaaatgaagacatgttatttagtattgatttttctttccatgatattcttaactgaaggtttgataatatgtttc |
34815186 |
T |
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| Q |
115 |
atttcttcttttagcagacaaatcttttttcacgatgacaaagattagtcctgaaattgaaaccaagatgccaatggaagcagttccgcctgtttcggcc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34815185 |
atttcttcttttagcagacaaatcttttttcacgatgacaaagattagtcctgaaattgaaaccaagatgccaatggaagcagttccgcctgtttcggcc |
34815086 |
T |
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| Q |
215 |
gatgtgagctttatttctaatagttttccaaagtataaactaggagctgatcatcaagtttttcaagagcctgctgaggataatcagggtccttctttga |
314 |
Q |
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| T |
34815085 |
gatgtgagctttatttctaatagttttccaaagtataaactaggagctgatcatcaagtttttcaagagactgctgaggataatcagggtccttctttga |
34814986 |
T |
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| Q |
315 |
aagaagttattgaacaagaagcttccaatttgtcagaacagaacaaccgtatctcagtccgtgaccttgccagt |
388 |
Q |
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| T |
34814985 |
aagaagttattgaacaagaagcttccaatttgtcagaacagaacaaccgtatctcagtccgtgaccttgccagt |
34814912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 235 - 388
Target Start/End: Original strand, 28686939 - 28687089
Alignment:
| Q |
235 |
tagttttccaaagtataaactaggagctgatcatcaagtttttcaagagcctgctgaggataatcagggtccttctttgaaagaagttattgaacaagaa |
334 |
Q |
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| T |
28686939 |
tagttttccaaagtataaattagaagttgatcatcaagtttttcaacagcctgctgaggataaccatggtcctt---tgaaagatgttattgaacaagaa |
28687035 |
T |
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| Q |
335 |
gcttccaatttgtcagaacagaacaaccgtatctcagtccgtgaccttgccagt |
388 |
Q |
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|||| |||||||||||| |||||||| |||||||||| ||||||||||||||| |
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| T |
28687036 |
gctttcaatttgtcagagcagaacaagtgtatctcagttcgtgaccttgccagt |
28687089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 236 - 370
Target Start/End: Original strand, 6641801 - 6641933
Alignment:
| Q |
236 |
agttttccaaagtataaactaggagctgatcatcaagttttt-caagagcctgctgaggataatcagggtccttctttgaaagaagttattgaacaagaa |
334 |
Q |
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|||||||||||||||||| ||||| | |||||||||||||| ||||||||| |||||||||| || ||||||| | ||||| ||||||||||||||| |
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| T |
6641801 |
agttttccaaagtataaattaggatttcatcatcaagttttttcaagagcctcctgaggataaccatggtcctt---taaaagatgttattgaacaagaa |
6641897 |
T |
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| Q |
335 |
gcttccaatttgtcagaacagaacaaccgtatctca |
370 |
Q |
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| T |
6641898 |
gcttccaatttgtcagagcagaacaaacgtatctca |
6641933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 308
Target Start/End: Original strand, 2689243 - 2689316
Alignment:
| Q |
235 |
tagttttccaaagtataaactaggagctgatcatcaagtttttcaagagcctgctgaggataatcagggtcctt |
308 |
Q |
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|||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||| || ||||||| |
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| T |
2689243 |
tagttttccaaagtttaaattaggagttgatcatcaagtttttcaagagcctgctgagggtaaacatggtcctt |
2689316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 12028801 - 12028889
Alignment:
| Q |
282 |
agcctgctgaggataatcagggtccttctttgaaagaagttattgaacaagaagcttccaatttgtcagaacagaacaaccgtatctca |
370 |
Q |
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|||||| ||||||||| || ||||||| ||| |||| |||||| ||||||||||||||||||||| ||| || ||||| ||||||||| |
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| T |
12028801 |
agcctgttgaggataaccatggtccttttttaaaaggtgttatttaacaagaagcttccaatttgtaagagcaaaacaagcgtatctca |
12028889 |
T |
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