View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12609_low_3 (Length: 332)
Name: NF12609_low_3
Description: NF12609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12609_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 11676864 - 11677173
Alignment:
| Q |
1 |
ttgaatcagttagtattgtgttcagttgattaactacttttctctgnnnnnnnncgaaaacactgtccttgacatcgagagtggataagagagtaatcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11676864 |
ttgaatcagttagtattgtgttcagttgattaacaacttttctctgttttttttcgaaaacactgtccttgacatcgagagtggataagagagtaatcaa |
11676963 |
T |
|
| Q |
101 |
ctgccgattcagataagaaggctggaacttactacatgccaaaacatccaaatctgcgttaactgaatcatacttgagcatgctcatcctcagtgacaac |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11676964 |
ctgccgattcagataacaaggctggaacttactacatgccaaaacatccaaatctgcgttaactgaatcatacttgcgcatgctcatcctcagtgacaac |
11677063 |
T |
|
| Q |
201 |
ttcacagatgaggttggatcaacagccacaactcctttgaatccaccataccgaatctgaaaggcagatggcattgaatcatgaccacattttttagcca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||| |||||||| |
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| T |
11677064 |
ttcacagatgaggttggatcaacagccacaactcctttgaatccacgataccgaatctgaaaggcagatggcatagaatcataatcacatgctttagcca |
11677163 |
T |
|
| Q |
301 |
ctctcctggc |
310 |
Q |
| |
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|| ||||||| |
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| T |
11677164 |
ctgtcctggc |
11677173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 11684601 - 11684910
Alignment:
| Q |
1 |
ttgaatcagttagtattgtgttcagttgattaactacttttctctgnnnnnnnncgaaaacactgtccttgacatcgagagtggataagagagtaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11684601 |
ttgaatcagttagtattgtgttcagttgattaacaacttttctctgttttttttcgaaaacactgtccttgacatcgagagtggataagagagtaatcaa |
11684700 |
T |
|
| Q |
101 |
ctgccgattcagataagaaggctggaacttactacatgccaaaacatccaaatctgcgttaactgaatcatacttgagcatgctcatcctcagtgacaac |
200 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| | | |||| |||||||||||||| |||| ||| |||||||||||||| |
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| T |
11684701 |
ctgccgattcagataacaaggctggaacttactacatgccaaaacatccaattttatgttatctgaatcatacttgtgcatactcttcctcagtgacaac |
11684800 |
T |
|
| Q |
201 |
ttcacagatgaggttggatcaacagccacaactcctttgaatccaccataccgaatctgaaaggcagatggcattgaatcatgaccacattttttagcca |
300 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11684801 |
ttcaaagatgaggttggatcaacagccacaactcctttgaatccacaataccgaatctgaaaggcagatggcattgaatcatgaccacattttttagcca |
11684900 |
T |
|
| Q |
301 |
ctctcctggc |
310 |
Q |
| |
|
|||||||||| |
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|
| T |
11684901 |
ctctcctggc |
11684910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 310
Target Start/End: Complemental strand, 11629174 - 11628867
Alignment:
| Q |
3 |
gaatcagttagtattgtgttcagttgattaactacttttctctgnnnnnnnncgaaaacactgtccttgacatcgagagtggataagagagtaatcaact |
102 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| | | || ||||||||||||||| |||||| ||||||||||||||||||||||||| |
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|
| T |
11629174 |
gaatcagttagtattgtgttcagttgatcaacagcttctttttgttttttctcgaaaacactgtcctcgacatcaagagtggataagagagtaatcaact |
11629075 |
T |
|
| Q |
103 |
gccgattcagataagaaggctggaacttactacatgccaaaacatccaaatctgcgttaactgaatcatacttgagcatgctcatcctcagtgacaactt |
202 |
Q |
| |
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| |||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
11629074 |
gtcgattcagataacaaggccgaaacttactacatgccaaaacatccaaatctgtgttgtctgaatcatacttgagcatgctcatcctcagtgacaattt |
11628975 |
T |
|
| Q |
203 |
cacagatgaggttggatcaacagccacaactcctttgaatccaccataccgaatctgaaaggcagatggcattgaatcatgaccacattttttagccact |
302 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| || ||||| ||||||| ||||||||||| ||||||| |
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| T |
11628974 |
caccgatgaggttggatcaacagccacaactcctttgtacccaccataccgaatctggaaggcggacggcatagaatcataaccacatttttgagccact |
11628875 |
T |
|
| Q |
303 |
ctcctggc |
310 |
Q |
| |
|
|||||||| |
|
|
| T |
11628874 |
ctcctggc |
11628867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 55 - 310
Target Start/End: Complemental strand, 11637891 - 11637636
Alignment:
| Q |
55 |
cgaaaacactgtccttgacatcgagagtggataagagagtaatcaactgccgattcagataagaaggctggaacttactacatgccaaaacatccaaatc |
154 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||||||||| || ||||| |||||| ||||||| |||||||||||||||| ||||||||| | |
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|
| T |
11637891 |
cgaaaacactgtccttgacatcaagagtacataagagagtaatcaattgtcgattgagataacaaggctgaaacttactacatgccagaacatccaattt |
11637792 |
T |
|
| Q |
155 |
tgcgttaactgaatcatacttgagcatgctcatcctcagtgacaacttcacagatgaggttggatcaacagccacaactcctttgaatccaccataccga |
254 |
Q |
| |
|
| |||| |||||||||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||| || ||||||||| | || ||||||| | |
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|
| T |
11637791 |
tatgttatctgaatcatacttgtgcatactcttcctcagtgacaacttcacagacgaggttggatcaacagctacgactcctttgtacccgccataccta |
11637692 |
T |
|
| Q |
255 |
atctgaaaggcagatggcattgaatcatgaccacattttttagccactctcctggc |
310 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11637691 |
atctgaaacgcagatggcactgaatcatgaccacattttttagccaccctcctggc |
11637636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 158 - 310
Target Start/End: Original strand, 11688770 - 11688922
Alignment:
| Q |
158 |
gttaactgaatcatacttgagcatgctcatcctcagtgacaacttcacagatgaggttggatcaacagccacaactcctttgaatccaccataccgaatc |
257 |
Q |
| |
|
|||| |||||||||||||| |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11688770 |
gttatctgaatcatacttgtgcatactcttcctcagtgacaacttcaaagatgaggttggatcaacagccacaactcctttgaatccaccataccgaatc |
11688869 |
T |
|
| Q |
258 |
tgaaaggcagatggcattgaatcatgaccacattttttagccactctcctggc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11688870 |
tgaaaggcagatggcattgaatcatgaccacattttttagccactctcctggc |
11688922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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