View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12609_low_4 (Length: 331)
Name: NF12609_low_4
Description: NF12609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12609_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 119; Significance: 9e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 8005876 - 8005633
Alignment:
| Q |
1 |
aaaccaagtttttgagcagtgaataagaagaactggaaaattaagttggtgatgata-taattgggaataacattagaacgacggagaagtgaattgctc |
99 |
Q |
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| T |
8005876 |
aaaccaagtttctgagcagtgaataagaagaactggaaaattaagttggtggtgaaactaattgggaataacattagaacgacggagaagtgaattgctc |
8005777 |
T |
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| Q |
100 |
cnnnnnnntccagttactgcag-nnnnnnnnncaattt---atgatcggttttccccagtgtgacggtggatcgacaaatttcattttcataaacaatgg |
195 |
Q |
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| T |
8005776 |
caaaaaaaaccagttactgcagtttttattttcaatttataatgatcggttttccccaatgtgacg-------gacaaatttcattttcataaacaatgg |
8005684 |
T |
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| Q |
196 |
cgagtgaattaataacgctaacagtgcacttgggggtcggtgtgattgcca |
246 |
Q |
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| T |
8005683 |
cgagtgaattaataacgttaacagtgcacttgggggtcgttgtgattgcca |
8005633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 9849384 - 9849306
Alignment:
| Q |
1 |
aaaccaagtttttgagcagtgaataagaagaactggaaaattaagttggtgatgatataattgggaataacattagaac |
79 |
Q |
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| T |
9849384 |
aaaccaattttttgagcggtgaataataagaactggaaaattaagttgttggtgaactaattgggaattacattagaac |
9849306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 9849235 - 9849178
Alignment:
| Q |
131 |
caatttatgatcggttttccccagtgtgacggtggatcgacaaatttcattttcataa |
188 |
Q |
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| T |
9849235 |
caatttattattggttttcaccaatgtatcggtggatcgacaaatttcattttcataa |
9849178 |
T |
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