View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12609_low_5 (Length: 295)
Name: NF12609_low_5
Description: NF12609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12609_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 41769905 - 41769621
Alignment:
| Q |
1 |
atccttattttacactttattgatatccctcgattttaggcaacagaaacataagagtttgaaaccattcgacccaaccattcacccatcctttgtgctc |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
41769905 |
atcctaattttacactttattgatatccctcgattttaggcaccagaaacataagagtttgaaacccttcaacccaaccattcacccatcctttgtgcta |
41769806 |
T |
|
| Q |
101 |
agctgagctgacctttgtttcaaaccaaccaataaccaactactcatcggcatcgcttctagccaagcagtgttttccaccaaaggtttctgttcattca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41769805 |
agctgagctgacctttgtttcaaaccaaccaataaccaactactcatcggcatcgcttctagccaagcagtgttttccaccaaaggtctctgttcattca |
41769706 |
T |
|
| Q |
201 |
ttccccctgtttcagcacacctattacttgtggaacactactcactcagtattcacccataaacctccactcacacatgtctctg |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41769705 |
ttccccctgtttcagcacacctattacttgtggaacactacttactcattattcacccataaacctccactcacacatgtctctg |
41769621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University