View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12609_low_6 (Length: 246)
Name: NF12609_low_6
Description: NF12609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12609_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 44112739 - 44112969
Alignment:
| Q |
1 |
aacaaatgaattgcgtaatgaaatgttgagccatgatgttttgtgaaatggaattagaccaaaatttgatcaaactgaatttatagaatctatctcgcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44112739 |
aacaaatgaattgcgtaatgaaatgttgagccatgatgttttgtgaaatggaattagaccaaaatttgatcaaactgaatttatagaatctatctcgcat |
44112838 |
T |
|
| Q |
101 |
tatgagatctttaaattatgaagaaaaagtaaaaagggtgctcgcaattcataacttatacatgttttgagtctaaaaatgtgtagttcggtttctgaca |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44112839 |
tatgagatctttaaattatgaaaaaaaagtaaaaagggtgctcgcaattcataacttatacatg-tttgagtctaaaaatgtgtagttcggtttctgaca |
44112937 |
T |
|
| Q |
201 |
attcagattttacattaattggcaaacttcat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44112938 |
attcagattttacattaattggcaaacttcat |
44112969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University