View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1260_high_5 (Length: 248)
Name: NF1260_high_5
Description: NF1260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1260_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 2206100 - 2205853
Alignment:
| Q |
1 |
ttcgatggtatccccatggagatggttacatcatagttaatggtttctcttttggtaattcatgtaatgctggatttggaggtctcttgagaaataataa |
100 |
Q |
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| T |
2206100 |
ttcgatggtatccccatggagatggttacatcatagttaatggtttctcttttggtaattcatgtaatgctgaatttggaggtctcttgagaaataataa |
2206001 |
T |
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| Q |
101 |
tgacagttgaattcaagaattttctagcactcgtggaaaagcgtctaatatgttggttgaactctcagcgatttggcatggccttcaa----------at |
190 |
Q |
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| T |
2206000 |
tgacagttagattcaagaattttctagctctcgtggaaaagcgtctaatatgttggttgaactctcaatgatttggtagggccttcaattgacttgggat |
2205901 |
T |
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| Q |
191 |
ctatgctatatgtctattattttagaatctaactcacgtacccctttg |
238 |
Q |
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| T |
2205900 |
ctatgctatatgtctattattttagaatctaactcacgtacccctttg |
2205853 |
T |
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