View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1260_low_1 (Length: 452)
Name: NF1260_low_1
Description: NF1260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1260_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 88 - 443
Target Start/End: Complemental strand, 26506746 - 26506391
Alignment:
| Q |
88 |
gaattaagtagtgagaaggagggtggcgccttaacccttctaaaatcactgccttaagataaggtaacttttccaaatcttcctcttttacttctctttc |
187 |
Q |
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| T |
26506746 |
gaattaagtagtgagaaggagggtggcgccttaacccttctaaaatcactgccttaagataaggtaacttttccaaatcttcctcttttacttctctttc |
26506647 |
T |
|
| Q |
188 |
ctctctatcaccaattacaactccaatttcctcgactattctttgttgcacatgtttgtatttgaccaaattcgccataacccactctaatgcagttgaa |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26506646 |
ctctctatcaccaattacaactccaatttcctcgactattctttgttgcacatgtttgtatttgaccaaattcgccataacccactctaatgcagttgaa |
26506547 |
T |
|
| Q |
288 |
gttgtatctgttcctgcagtgagaaactccgaacacagcgcaacaagttcatcgtcatcaagctttcgtttctcctcaggcaactccaaattcaacaaag |
387 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26506546 |
gttgtatctgttccggcagtgagaaactccgaacacagcgcaacaagctcatcgtcatcaagctttcgtttctcctcaggcaactccaaattcaacaaag |
26506447 |
T |
|
| Q |
388 |
tatcgacgtaacaaatggcacgttcatgatcaagattatttttattgctttctttt |
443 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26506446 |
tatcgacgtaacaaatggcacgttcatgatcaagattatttttattgctttctttt |
26506391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 95 - 402
Target Start/End: Complemental strand, 26494694 - 26494387
Alignment:
| Q |
95 |
gtagtgagaaggagggtggcgccttaacccttctaaaatcactgccttaagataaggtaacttttccaaatcttcctcttttacttctctttcctctcta |
194 |
Q |
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|||||||| |||||| || |||||||||||||| |||||||| ||||| | ||| || || || ||||||||||||||| | ||||| ||||||||||| |
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| T |
26494694 |
gtagtgagtaggaggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctccaaatcttcctctctcacttccctttcctctctt |
26494595 |
T |
|
| Q |
195 |
tcaccaattacaactccaatttcctcgactattctttgttgcacatgtttgtatttgaccaaattcgccataacccactctaatgcagttgaagttgtat |
294 |
Q |
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||||||| || || |||||||||| |||| | |||||||| ||||||| ||| ||||||||||||||||||||||||| || |||||||||||| | |
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| T |
26494594 |
tcaccaaccacctcttcaatttcctccactagcatctgttgcacgtgtttgtctttcaccaaattcgccataacccactctagtgtagttgaagttgtgt |
26494495 |
T |
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| Q |
295 |
ctgttcctgcagtgagaaactccgaacacagcgcaacaagttcatcgtcatcaagctttcgtttctcctcaggcaactccaaattcaacaaagtatcgac |
394 |
Q |
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| T |
26494494 |
cagttcctgcggtgagaaactcggaacatagtgcaacaacttcaccttcgttaagcttccgtttctcctcaggtaaccgcaaattcaacaaagtatccac |
26494395 |
T |
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| Q |
395 |
gtaacaaa |
402 |
Q |
| |
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||||||| |
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| T |
26494394 |
ataacaaa |
26494387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 252 - 322
Target Start/End: Original strand, 15176740 - 15176810
Alignment:
| Q |
252 |
accaaattcgccataacccactctaatgcagttgaagttgtatctgttcctgcagtgagaaactccgaaca |
322 |
Q |
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| T |
15176740 |
accaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcatttagaaactcggaaca |
15176810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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