View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1260_low_3 (Length: 420)
Name: NF1260_low_3
Description: NF1260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1260_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 95 - 324
Target Start/End: Complemental strand, 43877745 - 43877515
Alignment:
| Q |
95 |
gcggtggacatgataagaacttgtgtcttggtgtatgtaacatgttttaaatatctgtgcatgtaatgatgtatcgtaattctcatactaagcaagatta |
194 |
Q |
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| T |
43877745 |
gcggtggacatgataagaacttgtgtcttggtgtatgtaacatgttttaaatatctgtgcatgcaatgatgtatcgtaattctcatactaagcaagatta |
43877646 |
T |
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| Q |
195 |
ttgtcaaggtgcattagttcttgtccttcatcatcactagtgat-tacagtttcctaatttaccaaaataaacgtgcataaattaaagagcacaatcgtc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43877645 |
ttgtcaaggtgcattagttcttgtccttcatcatcacttgtgatgtacagtttcctaatttaccaaaataaacgtgcataaattaaagagcacaatcgtc |
43877546 |
T |
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| Q |
294 |
aaattaacagcagtctgcttcatttcatctt |
324 |
Q |
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| T |
43877545 |
aaattaacagcagtctgcttcatttcatctt |
43877515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 43877824 - 43877768
Alignment:
| Q |
8 |
ccaacaatatcatatttatcggacagtataatatcaggttcattcgcagttctgata |
64 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43877824 |
ccaacagtatcatatttatcggacagtataatatcaggttcattcgcagttctgata |
43877768 |
T |
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