View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1260_low_5 (Length: 353)
Name: NF1260_low_5
Description: NF1260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1260_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 94 - 340
Target Start/End: Original strand, 38122497 - 38122745
Alignment:
| Q |
94 |
tgctagtgcgccaaaatttctttcacaacgacccaaagaagttcaatgatgttggaggtggtgtacttggatgtaatgggctgcattccagtttcagaac |
193 |
Q |
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| T |
38122497 |
tgcttgtgcgccaaaatttctttcacaacgacccaaataatttgaatgatgttggaggtggtgtacttagttgcaaagggctgcattccagctttagaac |
38122596 |
T |
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| Q |
194 |
cactcaaagtgaattgtctctgaacataggtttgatcttgatgcctttgttg--tatatattctcatctgaataataatttctcacatttctttacttct |
291 |
Q |
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| T |
38122597 |
cacacaaagtggattgtctctgaacataggtttgatcttgatgcctttgttgtatatatattctcatctgaataataatttgtcacatttctttagttct |
38122696 |
T |
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| Q |
292 |
ttcaatttgtttagatgtgtcgacaaccatgattgtacgtcctgggcct |
340 |
Q |
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| T |
38122697 |
ttcaatttgtttagatgtgtcgacaaccatgattgtacgtcctgggcct |
38122745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 141 - 340
Target Start/End: Original strand, 38114055 - 38114250
Alignment:
| Q |
141 |
gatgttggaggtggtgtacttggatgtaatgggctgcattccagtttcagaaccactcaaagtgaattgtctctgaacataggtttgatcttgatgcctt |
240 |
Q |
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| T |
38114055 |
gatgtaggaggtggtgttcttggatgcagagggctgcattctagcttcaggaccacacaaagtgggctgtctttgaatataggtat-attttgttgcctt |
38114153 |
T |
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| Q |
241 |
tgttgtatatattctcatctgaataataatttctcacatttctttacttctttcaatttgtttagatgtgtcgacaaccatgattgtacgtcctgggcct |
340 |
Q |
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| T |
38114154 |
tgctgtctgtattctaatgtgattaat---ttgtcactattgcttatttcattcaatttgtttagacgtgtcaacaaccatgattgtccatcctgggcct |
38114250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 327
Target Start/End: Original strand, 14914901 - 14915134
Alignment:
| Q |
94 |
tgctagtgcgccaaaatttctttcacaacgacccaaagaagttcaatgatgttggaggtggtgtacttggatgtaatgggctgcattccagtttcagaac |
193 |
Q |
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|||| |||||||||| |||||| || ||||| || | || ||||| |||| || ||||| ||||||||||| | ||| ||||||| || || ||||| |
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| T |
14914901 |
tgcttgtgcgccaaagtttcttccataacgatcccaggagtttcaagaatgtaggtggtggagtacttggatgcagagggttgcattcgagctttagaac |
14915000 |
T |
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| Q |
194 |
cactcaaagtgaattgtctctgaacataggtttgatcttgatgcctttgttgtatatattctcatctgaataataatttctcaca-tttctttacttctt |
292 |
Q |
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| T |
14915001 |
cacacaaagtggactgtgtttgaatataggttaaatcttgatgcctttgtcg-ctatcttctcgtctgaataataatttttcgcacttccttaatttttt |
14915099 |
T |
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| Q |
293 |
tcaatttgtttagatgtgtcgacaaccatgattgt |
327 |
Q |
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| T |
14915100 |
tcaatttgtttagatgtgtcaacaacaatgattgt |
14915134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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