View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261-Insertion-1 (Length: 292)
Name: NF1261-Insertion-1
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261-Insertion-1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 14150234 - 14150518
Alignment:
| Q |
8 |
gttccgaccattaaggaccgagctattgagatatataagctggttgcaaatcagaagtatagtaaggcaagaaaccaggacgcattattggctgcttgtc |
107 |
Q |
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| T |
14150234 |
gttccgaccattaaggaccgagctattgagatatataagctggttgcaaatcagaagtatagtaaggcaagaaaccaggacgcattattggctgcttgcc |
14150333 |
T |
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| Q |
108 |
tctacattgcttgtcgacaagaagacaagccacacactgtaaaggaaatttcctcgattgccattggagccaccaagaaggaaattggccgcgcaaaaca |
207 |
Q |
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| T |
14150334 |
tctacattgcttgtcgacaagaagacaagccacacactgtaaaggaaatttcctcgattgctattggagccaccaagaaggaaattggccgcgcaaaaca |
14150433 |
T |
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| Q |
208 |
atacatcatgaaacaactagctttggagaatggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacga |
292 |
Q |
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| T |
14150434 |
atacatcatgaaacaactagctttggagaatggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacga |
14150518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 13609766 - 13610050
Alignment:
| Q |
8 |
gttccgaccattaaggaccgagctattgagatatataagctggttgcaaatcagaagtatagtaaggcaagaaaccaggacgcattattggctgcttgtc |
107 |
Q |
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| T |
13609766 |
gttccgatcattaaggaccgagctaatgagatatataagcgggttcaagatcagaagtctagtaggggaagaaatcaagacgcattattggctgcttgcc |
13609865 |
T |
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| Q |
108 |
tctacattgcttgtcgacaagaagacaagccacacactgtaaaggaaatttcctcgattgccattggagccaccaagaaggaaattggccgcgcaaaaca |
207 |
Q |
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| T |
13609866 |
tctacattgcttgtcgacaagaagacaagccacgcactgtaaaggaaatttgctcggttgccaatggagccacaaagaaggaaattggccgtgcaaaaga |
13609965 |
T |
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| Q |
208 |
atacatcatgaaacaactagctttggagaatggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacga |
292 |
Q |
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| T |
13609966 |
atacatagtgaaacaacttggtttggagaatggtggtcaatctgtagaaatgggaacaattcatgctggggactttatgagacga |
13610050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 14074823 - 14075107
Alignment:
| Q |
8 |
gttccgaccattaaggaccgagctattgagatatataagctggttgcaaatcagaagtatagtaaggcaagaaaccaggacgcattattggctgcttgtc |
107 |
Q |
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| T |
14074823 |
gttcccaccattaaggaccgagctaatgagatatataagcgggttgaagatcagaagtctagtaagggaagaaatcaggaagcattattggctgcttgcg |
14074922 |
T |
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| Q |
108 |
tctacattgcttgtcgacaagaagacaagccacacactgtaaaggaaatttcctcgattgccattggagccaccaagaaggaaattggccgcgcaaaaca |
207 |
Q |
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| T |
14074923 |
tctacattgcttgtcgacaagaagacaagccacgcactataaaggaaatttgtttgattgccaatggagccaccaagaaggaaattgtccgcgcaaaaga |
14075022 |
T |
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| Q |
208 |
atacatcatgaaacaactagctttggagaatggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacga |
292 |
Q |
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| T |
14075023 |
atacatagtgaaacaactgggtttagagaatggtggtcaatctattgaaatgggaataattcatattggggactttatgggacga |
14075107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 152 - 287
Target Start/End: Complemental strand, 36012561 - 36012426
Alignment:
| Q |
152 |
gaaatttcctcgattgccattggagccaccaagaaggaaattggccgcgcaaaacaatacatcatgaaacaactagctttggagaatggtggtcaatctg |
251 |
Q |
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| T |
36012561 |
gaaatttgctcaattgccaatggagccaccaagaaggaaattggccgcgcaaaagaatacatagtgaaacaactgggtttggagaatggcggtcaatctg |
36012462 |
T |
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| Q |
252 |
tagaaatgggaacaactcatattggggactttatgg |
287 |
Q |
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| T |
36012461 |
ttgaaatgggaacaattcatgctggggactttatgg |
36012426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 21 - 152
Target Start/End: Complemental strand, 36012786 - 36012655
Alignment:
| Q |
21 |
aggaccgagctattgagatatataagctggttgcaaatcagaagtatagtaaggcaagaaaccaggacgcattattggctgcttgtctctacattgcttg |
120 |
Q |
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|||||||||||| |||||||||||||| ||||| | ||||||||| ||| | || |||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
36012786 |
aggaccgagctaatgagatatataagcgggttgaagatcagaagtctagcaggggaagaaatcaggacgcattattggctgcttgcctctacattgcttg |
36012687 |
T |
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| Q |
121 |
tcgacaagaagacaagccacacactgtaaagg |
152 |
Q |
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| T |
36012686 |
tcgacaagaagacaagccacgcaccgtaaagg |
36012655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 22090788 - 22090700
Alignment:
| Q |
152 |
gaaatttcctcgattgccattggagccaccaagaaggaaattggccgcgcaaaacaatacatcatgaaacaactagctttggagaatgg |
240 |
Q |
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| T |
22090788 |
gaaatttgctctgttgccaatggtgccacaaagaaggaaattggccgagcaaaagagtacatagtgaaacaacttggtttggataatgg |
22090700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 22091012 - 22090900
Alignment:
| Q |
20 |
aaggaccgagctattgagatatataagctggttgcaaatcagaagtatagtaaggcaagaaaccaggacgcattattggctgcttgtctctacattgctt |
119 |
Q |
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||||| ||||| | ||||||||||||| ||||| | | || |||| ||||| | |||||| || || || || |||||||||||| ||||||| |||| |
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| T |
22091012 |
aaggatcgagcaaatgagatatataagagggttgaagaccaaaagtctagtagaggaagaaatcaagatgctttgttggctgcttgtatctacatcgctt |
22090913 |
T |
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| Q |
120 |
gtcgacaagaaga |
132 |
Q |
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| T |
22090912 |
gccgacaagaaga |
22090900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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