View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261-Insertion-2 (Length: 416)
Name: NF1261-Insertion-2
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261-Insertion-2 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 81 - 416
Target Start/End: Complemental strand, 33226189 - 33225870
Alignment:
| Q |
81 |
tcattgcatggctttagatcacggtgaatgatgccatttgcatgtaaatattccattgcttgagaaatatctaaagtaaaacttagataaatactctctt |
180 |
Q |
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| T |
33226189 |
tcattgcatggctttagatcacggtgaattatgtcatttgcatgtaaatattccattgcttaagaaatatcaaaagtaaaacttagataaatactctc-t |
33226091 |
T |
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| Q |
181 |
aagtgtttctaataaagtgaaaccagcttccaaaagttccgtgattatcaacattaatggttccacatatgctcccataaactgcaaaaggagagcttaa |
280 |
Q |
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| T |
33226090 |
aagtgtttc---taaagtg-aactagcttccaaaagttccgtgattatcaacattgatggtttcacagatgctccaataaactgcaaaa--tgagcttaa |
33225997 |
T |
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| Q |
281 |
cataagtacttcattttgcatcattcttttgt-gggggttgacaaaaaataaaatttcatttaaagaaaagggatggattcagtgcagttagtatgtcat |
379 |
Q |
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| T |
33225996 |
cataagtacttcattttgcatcattcttttgtggggggttgacaaaaaatcaaattccatttaaag-aaagggatggattcagtgcag---------cat |
33225907 |
T |
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| Q |
380 |
atggatgttgctttcaacctcgttctttccattttag |
416 |
Q |
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| T |
33225906 |
atggatgttgttttcaaacttgttctttccattttag |
33225870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 33227111 - 33227183
Alignment:
| Q |
93 |
tttagatcacggtgaatgatgccatttgcatgtaaatattccattgcttgagaaatatctaaagtaaaactta |
165 |
Q |
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| T |
33227111 |
tttagatcacgatgaatgatgtcatttgcatgtaaatattccattgcttaagaaatatcaaaagtaaaactta |
33227183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 344 - 416
Target Start/End: Original strand, 10528744 - 10528816
Alignment:
| Q |
344 |
agaaaagggatggattcagtgcagttagtatgtcatatggatgttgctttcaacctcgttctttccattttag |
416 |
Q |
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| T |
10528744 |
agaaaagggatggattcagtgcagttagtatgtcatatggatgttgctttcaacctcgttctttccattttag |
10528816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 165
Target Start/End: Complemental strand, 10528166 - 10528090
Alignment:
| Q |
89 |
tggctttagatcacggtgaatgatgccatttgcatgtaaatattccattgcttgagaaatatctaaagtaaaactta |
165 |
Q |
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| T |
10528166 |
tggctttagatcacggtgaatgatgtcatttgcatgtaaatactccatagcttgagaaatatcaaaagcaaaactta |
10528090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 151
Target Start/End: Complemental strand, 7469773 - 7469712
Alignment:
| Q |
90 |
ggctttagatcacggtgaatgatgccatttgcatgtaaatattccattgcttgagaaatatc |
151 |
Q |
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| T |
7469773 |
ggcttgagatcacggtgaattattccatttgcatgcagatattccattgcttgtgaaatatc |
7469712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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