View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261-Insertion-5 (Length: 660)
Name: NF1261-Insertion-5
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 36547901 - 36548270
Alignment:
| Q |
8 |
ttacttacctttgtgttgatgatccaggcgaaaatcatgagccattgagctggaatatgagacttggcatagcactagacgttgcaagggtgatggaata |
107 |
Q |
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| T |
36547901 |
ttacttacctttgtgttgatgatccaggcgaaaatcatgagccattgagctggaatatgagacttggcatagcactagacgttgcaagggtgatggaata |
36548000 |
T |
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| Q |
108 |
tcttcattattcggtattcagtatactcaaatattgtttgttaatttagtaaacgtacacatagggtacagagaacaggtttacnnnnnnnnnnnnnnnn |
207 |
Q |
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| T |
36548001 |
tctacattattcggtattcattatactcaaatattgtttgttaatttagtaaacttacacatagggaacagagaacaggtttacttttggttttttattt |
36548100 |
T |
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| Q |
208 |
nnctcaataaataactcatcgcaggccgatcctcctattgtgcaccgtgacatcaaatcttccaacattctgttggacaagtttatgaaagccaaggtaa |
307 |
Q |
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| T |
36548101 |
ttctcaataaataactcatcgcaggccgatcctcctattgtgcaccgtgacatcaaatcttccaacattctgttggacaagtatatgaaagccaaggtaa |
36548200 |
T |
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| Q |
308 |
ccgacctttacctttagttcacaaaaatatgaatagggcttcaatggtacttttatgcattgcattctcc |
377 |
Q |
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| T |
36548201 |
ccgacctttgcctttagttcacaaaaatatgaatagggcttcaatggtacttttatgcattgcattctcc |
36548270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 466 - 660
Target Start/End: Original strand, 36548334 - 36548528
Alignment:
| Q |
466 |
accaaaactgtattatcataactctacctttaggaggaagtaaacaatgtcatagttttcttgatcccgagaagacattgatacctagtttttgtaaaga |
565 |
Q |
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| T |
36548334 |
accaaaactgtatcatcataactctagctttaggaggaagtaaacaatgtcatagttttcttgatcccgagaagacattgatacctagtttttgtaaaga |
36548433 |
T |
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| Q |
566 |
tgatgctgccattttgctattccattatatccccttacttgattttgtccatattgaacataannnnnnncattaatattctgttaacatgcata |
660 |
Q |
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| T |
36548434 |
tgatgctgccattttgctattccattatatccccttacttgattttgtccatattgaacataatttttttcattaatattctgttaacatgcata |
36548528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 541 - 598
Target Start/End: Original strand, 3991279 - 3991336
Alignment:
| Q |
541 |
cattgatacctagtttttgtaaagatgatgctgccattttgctattccattatatccc |
598 |
Q |
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| T |
3991279 |
cattgatacctagtttttgtaaagatgatgctgccattttgctattctattatatccc |
3991336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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