View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1261-Insertion-6 (Length: 692)

Name: NF1261-Insertion-6
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1261-Insertion-6
NF1261-Insertion-6
[»] chr6 (6 HSPs)
chr6 (82-420)||(15706879-15707219)
chr6 (417-597)||(15703315-15703505)
chr6 (627-688)||(15703224-15703285)
chr6 (27-89)||(15707864-15707926)
chr6 (627-667)||(11152382-11152422)
chr6 (629-673)||(34498249-34498293)
[»] chr1 (2 HSPs)
chr1 (30-173)||(40049089-40049232)
chr1 (79-173)||(35650816-35650910)
[»] chr7 (1 HSPs)
chr7 (79-173)||(36356824-36356918)
[»] chr5 (2 HSPs)
chr5 (28-146)||(20925205-20925323)
chr5 (28-173)||(8710247-8710392)
[»] chr2 (1 HSPs)
chr2 (366-407)||(36090690-36090731)


Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 82 - 420
Target Start/End: Complemental strand, 15707219 - 15706879
Alignment:
Q  82 aacacagtctttacattcatcctgttacggatcatatcttttacctcatcaggcacatttcgactgagcgatgcctcggacttctccaaattaaccagtt 181  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  15707219 aacacagtctttacattcatcctgttacgggtcatatcttttacctcatcaagcacatttcgactgaacgatgcctcagacttctccaaattaaccagtt 15707120  T
Q  182 gccctgatgcagcctgatatttggatagagtttccatgatgcaatcagcttcggtaggattcgcacgggcaaacaacaaactatcatctgc--aaagaat 279  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||| |||    
T  15707119 gccctgatgcaacctgatatttggataaagtttccatgatgcaatcagcttcggtaggattcgcacgagcaaacaacaaactatcatctgcaaaaaaaat 15707020  T
Q  280 aaatgaatgatttgaggagctctcctagccacttggatgccatggattttgttaccattcacctgctccttgaaaaggccggacaaaacatctacacaaa 379  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15707019 aaatgagtgatttgaggaactctcctagccacttggatgccatggattttgttaccattcacctgctccttgaaaaggccggacaaaacatctgcacaaa 15706920  T
Q  380 gaacaaacaaatagggggagagggggtccccttggcgcagg 420  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  15706919 gaacaaacaaataggggaagagggggtccccttggtgcagg 15706879  T

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Target: chr6; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 417 - 597
Target Start/End: Complemental strand, 15703505 - 15703315
Alignment:
Q  417 caggcccctctccggagagaagcttctgctagggcgcccattaatgaggatctgataggaaactgtggacatacacctaaagatcagttggaccatagta 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15703505 caggcccctctccggagagaagcttctgctagggcgcccattaatgaggatctgataggaaactgtggacatacacctaaagattagttggaccatagta 15703406  T
Q  517 tccgggaagcccatgga----aa------aacaacaaagttccactctatccggtcgtaagctttggacatatcaagctttagcgctatca 597  Q
    |||||||||||||||||    ||      ||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  15703405 tccgggaagcccatggatttcaaaactccaacaataaagttccactctatccggtcataagctttggacatataaagctttagcgccatca 15703315  T

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Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 627 - 688
Target Start/End: Complemental strand, 15703285 - 15703224
Alignment:
Q  627 aaccaatgaaaacactccatagctatcaaagcattatctgtgattaatctacctttgacaaa 688  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15703285 aaccaatgaaaacactccatagctatcaaagcattatctgtgattaatctacctttgacaaa 15703224  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 15707926 - 15707864
Alignment:
Q  27 atccttcttggatcttccaaaaactactggtaatcccagatatttggagtgagacaacacagt 89  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  15707926 atccttcttggatcttccaaaaactaccggtaatcccaaatatttggagcgagacaacacagt 15707864  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 667
Target Start/End: Original strand, 11152382 - 11152422
Alignment:
Q  627 aaccaatgaaaacactccatagctatcaaagcattatctgt 667  Q
    ||||||||||||||||||||||| || | ||||||||||||    
T  11152382 aaccaatgaaaacactccatagcaatgagagcattatctgt 11152422  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 629 - 673
Target Start/End: Complemental strand, 34498293 - 34498249
Alignment:
Q  629 ccaatgaaaacactccatagctatcaaagcattatctgtgattaa 673  Q
    |||||||||||||||||| ||||| | ||||||||| ||||||||    
T  34498293 ccaatgaaaacactccatggctatgagagcattatcagtgattaa 34498249  T

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Target: chr1 (Bit Score: 56; Significance: 8e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 30 - 173
Target Start/End: Complemental strand, 40049232 - 40049089
Alignment:
Q  30 cttcttggatcttccaaaaactactggtaatcccagatatttggagtgagacaacacagtctttacattcatcctgttacggatcatatcttttacctca 129  Q
    |||||||||||| ||||| || ||||| |  ||||| ||||| |  ||||||| ||||||||||||||||||| |||||| |||||| |||||| ||||     
T  40049232 cttcttggatctaccaaacaccactggaagacccaggtatttagtatgagacatcacagtctttacattcatcttgttacagatcatttctttttcctct 40049133  T
Q  130 tcaggcacatttcgactgagcgatgcctcggacttctccaaatt 173  Q
    ||| ||||||||||||| |  |||||||| ||||| ||||||||    
T  40049132 tcacgcacatttcgactaaatgatgcctcagacttatccaaatt 40049089  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 35650816 - 35650910
Alignment:
Q  79 gacaacacagtctttacattcatcctgttacggatcatatcttttacctcatcaggcacatttcgactgagcgatgcctcggacttctccaaatt 173  Q
    |||| |||||||||||| |||||| |||||| |||||| |||||| |||| ||| ||||||||||||| |  ||||||||  |||| ||||||||    
T  35650816 gacatcacagtctttactttcatcttgttacagatcatttctttttcctcttcacgcacatttcgactaaatgatgcctcaaacttatccaaatt 35650910  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 36356918 - 36356824
Alignment:
Q  79 gacaacacagtctttacattcatcctgttacggatcatatcttttacctcatcaggcacatttcgactgagcgatgcctcggacttctccaaatt 173  Q
    |||| ||||||||||||||||||| ||||||  ||||| |||||| |||| ||| ||||||||||||| |  |||||||| ||||| ||||||||    
T  36356918 gacatcacagtctttacattcatcttgttacaaatcatttctttttcctcttcacgcacatttcgactaaatgatgcctcagacttatccaaatt 36356824  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 146
Target Start/End: Original strand, 20925205 - 20925323
Alignment:
Q  28 tccttcttggatcttccaaaaactactggtaatcccagatatttggagtgagacaacacagtctttacattcatcctgttacggatcatatcttttacct 127  Q
    |||||||||||||| ||||| || ||||| |  ||||| ||| | |  ||||||| |||||||||||||||||||   |||| |||||| |||||| |||    
T  20925205 tccttcttggatctaccaaacacaactgggaggcccaggtatctagtatgagacatcacagtctttacattcatctgattacagatcatttctttttcct 20925304  T
Q  128 catcaggcacatttcgact 146  Q
    | ||| | |||||||||||    
T  20925305 cttcacgaacatttcgact 20925323  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 173
Target Start/End: Original strand, 8710247 - 8710392
Alignment:
Q  28 tccttcttggatcttccaaaaactactggtaatcccagatatttggagtgagacaacacagtctttacattcatcctgttacggatcatatcttttacct 127  Q
    |||||||||||||| ||||| || ||||| |  ||||| ||| | |  ||||||| |||||||||||||||||||   ||||  ||||| |||||| |||    
T  8710247 tccttcttggatctaccaaacacaactgggaggcccaggtatctagtatgagacatcacagtctttacattcatctgattacatatcatttctttttcct 8710346  T
Q  128 catcaggcacatttcgactgagcgatgcctcggacttctccaaatt 173  Q
    | |||  |||||||||||| |  |||||||| || || ||||||||    
T  8710347 cttcacacacatttcgactaaatgatgcctctgatttgtccaaatt 8710392  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 366 - 407
Target Start/End: Complemental strand, 36090731 - 36090690
Alignment:
Q  366 aacatctacacaaagaacaaacaaatagggggagagggggtc 407  Q
    ||||||| |||||||||||||||||||||| ||||| |||||    
T  36090731 aacatctgcacaaagaacaaacaaatagggtgagagtgggtc 36090690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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