View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1261-Insertion-7 (Length: 439)

Name: NF1261-Insertion-7
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1261-Insertion-7
NF1261-Insertion-7
[»] chr1 (6 HSPs)
chr1 (8-439)||(7554367-7554798)
chr1 (123-393)||(29658800-29659070)
chr1 (119-184)||(19468333-19468398)
chr1 (120-262)||(9581193-9581335)
chr1 (249-390)||(29718953-29719094)
chr1 (119-262)||(9586761-9586904)
[»] chr5 (6 HSPs)
chr5 (252-393)||(41901568-41901709)
chr5 (273-412)||(32267381-32267520)
chr5 (252-382)||(41889587-41889717)
chr5 (126-262)||(41901376-41901512)
chr5 (147-262)||(32267597-32267712)
chr5 (349-390)||(17205527-17205568)
[»] chr8 (6 HSPs)
chr8 (252-391)||(27922435-27922574)
chr8 (252-391)||(18315306-18315445)
chr8 (274-332)||(32151287-32151345)
chr8 (152-259)||(34936027-34936134)
chr8 (273-391)||(17636455-17636572)
chr8 (286-391)||(28246360-28246465)
[»] chr3 (5 HSPs)
chr3 (273-412)||(51113835-51113974)
chr3 (252-391)||(13470765-13470904)
chr3 (252-391)||(51120926-51121065)
chr3 (273-391)||(51764494-51764612)
chr3 (162-256)||(1657378-1657472)
[»] chr2 (2 HSPs)
chr2 (273-413)||(45245139-45245279)
chr2 (265-391)||(1037710-1037836)
[»] chr6 (20 HSPs)
chr6 (252-414)||(9411259-9411421)
chr6 (252-384)||(6585270-6585402)
chr6 (273-413)||(6402765-6402905)
chr6 (55-257)||(9411482-9411681)
chr6 (265-412)||(7994228-7994375)
chr6 (252-413)||(14820598-14820759)
chr6 (288-391)||(6415893-6415996)
chr6 (256-390)||(19632367-19632501)
chr6 (265-390)||(6603248-6603373)
chr6 (266-391)||(11936322-11936447)
chr6 (266-391)||(11948302-11948427)
chr6 (252-391)||(14818309-14818448)
chr6 (252-391)||(6432088-6432227)
chr6 (273-391)||(7119084-7119202)
chr6 (348-413)||(6394769-6394834)
chr6 (144-260)||(7119284-7119397)
chr6 (273-391)||(7131562-7131680)
chr6 (144-260)||(7131762-7131875)
chr6 (87-205)||(19632615-19632733)
chr6 (142-260)||(10579593-10579708)
[»] chr4 (19 HSPs)
chr4 (277-391)||(546840-546954)
chr4 (265-391)||(55908774-55908900)
chr4 (266-332)||(1524533-1524599)
chr4 (252-413)||(1548457-1548618)
chr4 (252-431)||(8184063-8184242)
chr4 (252-413)||(1513440-1513598)
chr4 (252-390)||(640843-640981)
chr4 (252-393)||(7307785-7307926)
chr4 (142-260)||(1600546-1600664)
chr4 (274-391)||(558425-558542)
chr4 (127-216)||(8186930-8187019)
chr4 (342-391)||(53761892-53761941)
chr4 (313-385)||(1489455-1489527)
chr4 (252-331)||(553466-553545)
chr4 (252-335)||(570334-570417)
chr4 (252-391)||(12121490-12121629)
chr4 (349-391)||(553406-553448)
chr4 (55-216)||(1548193-1548354)
chr4 (349-413)||(1524613-1524677)
[»] scaffold0295 (1 HSPs)
scaffold0295 (265-391)||(670-796)
[»] chr7 (2 HSPs)
chr7 (277-414)||(15092209-15092346)
chr7 (277-390)||(10614521-10614634)
[»] scaffold0014 (1 HSPs)
scaffold0014 (204-260)||(88943-88999)


Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 439
Target Start/End: Complemental strand, 7554798 - 7554367
Alignment:
Q  8 taaactggaatacacatatttcacaaaaaataatatggagaagtcttattctttgatggatcttgttgtaagccccaacttaaagtctctatgtttgggt 107  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  7554798 taaactggaatacacatatttcacaaaaaataatatggagaattcttattctttgatggattttgttgtaagccccaacttaaagtctctatgtttgggt 7554699  T
Q  108 cacagtttacagttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaag 207  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554698 cacagtttacagttaagagatgaaaacatcaaagtcttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaag 7554599  T
Q  208 aaggtatttttcacattttaagaagatgtcataacattagacatttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7554598 aaggtatttttcacattttaagaagatgtcataacattagacatttgaacttatcatatacaagtgttgatgatgaagcactctatatgatctcaaagag 7554499  T
Q  308 ttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagatt 407  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7554498 ttgtggtggacttttacaactgttactgaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagatt 7554399  T
Q  408 aatttgcagaattgtggtaaagtgagtggcaa 439  Q
    ||||||||||||||||||||||||| ||||||    
T  7554398 aatttgcagaattgtggtaaagtgaatggcaa 7554367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 123 - 393
Target Start/End: Original strand, 29658800 - 29659070
Alignment:
Q  123 agagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcaca 222  Q
    |||||| ||||||||| | |||| |||||||| || ||||| || ||  ||||||||||||   ||||  | ||| ||||| |||||  ||||| |||      
T  29658800 agagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagctattggaaggacgtatctgaagaaactatttctcaag 29658899  T
Q  223 ttttaagaagatgtcataacattagacatttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggactttt 322  Q
    |||||| | | |||  ||| ||||  ||||||||||| || ||||| |  ||||||||| |||||||| |||| || |||| ||||||| |||| |||||    
T  29658900 ttttaaaatgttgtagtaagattaagcatttgaacttgtcatataccaaagttgatgataaagcactccatatcatatcaacgagttgttgtggcctttt 29658999  T
Q  323 acaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgc 393  Q
     ||| |||||||  || | |||   ||||||||||| || ||||| || ||||||||  ||||||||||||    
T  29659000 gcaattgttactggaatgttgtacgaatgtcacagagaatggagtaaaacatgtggttcaaaactgcacgc 29659070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 19468333 - 19468398
Alignment:
Q  119 gttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaa 184  Q
    |||||| ||||||||||||| | |||| |||||||| |||||||||||  ||||||||||||||||    
T  19468333 gttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttgaa 19468398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 262
Target Start/End: Complemental strand, 9581335 - 9581193
Alignment:
Q  120 ttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttc 219  Q
    ||||||||| ||||||||| | |||| ||||| || || ||||||||  ||||||||||| ||    |||||| | |||||||||||  |||||||| ||    
T  9581335 ttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatctgcgccattgctgtaacatatctaaaagaggtatttgtc 9581236  T
Q  220 acattttaagaagatgtcataacattagacatttgaacttatc 262  Q
    |  |||||| |||||||  | | ||||||||||||||| ||||    
T  9581235 aagttttaaaaagatgttgtcagattagacatttgaacatatc 9581193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 390
Target Start/End: Original strand, 29718953 - 29719094
Alignment:
Q  249 catttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgata 348  Q
    ||||||||||| || ||||| |  ||||||||| || ||||| |||| || |||| ||||||| |||| ||||| ||| |||||||  || | |||   |    
T  29718953 catttgaacttgtcatataccaacgttgatgataaatcactccatatcatatcaacgagttgttgtggccttttgcaattgttactggaaagttgtatga 29719052  T
Q  349 atgtcacagaaaagggagtgaagcatgtggtagaaaactgca 390  Q
    |||||||||| || |||||||| ||||||||  |||||||||    
T  29719053 atgtcacagagaatggagtgaaacatgtggttcaaaactgca 29719094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 262
Target Start/End: Complemental strand, 9586904 - 9586761
Alignment:
Q  119 gttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtattttt 218  Q
    |||||||||| ||||||||| | |||| ||||| || || ||||||||  ||||||||||| ||    |||||| | |||||||||||  |||||||| |    
T  9586904 gttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgatctgtgccattgctgtaacatatctaaaagaggtatttgt 9586805  T
Q  219 cacattttaagaagatgtcataacattagacatttgaacttatc 262  Q
    ||  |||||  |||||||  | | ||||||||||||||| ||||    
T  9586804 caagttttacaaagatgttgtcagattagacatttgaacatatc 9586761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 252 - 393
Target Start/End: Original strand, 41901568 - 41901709
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| || |||||||  ||||||||||||||||| ||||||||||||||||||||| ||||||||||  || ||| |||| |||  ||| || |||    
T  41901568 ttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtggacttttgaaattgtcacttcaagattgtaatgatg 41901667  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgc 393  Q
    ||||| | ||||||||||||||||||||||||||||| ||||    
T  41901668 tcacaaagaagggagtgaagcatgtggtagaaaactgtacgc 41901709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 412
Target Start/End: Complemental strand, 32267520 - 32267381
Alignment:
Q  273 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 372  Q
    ||||||||||||||||| ||||||||||||||||||||| |||| |||||  || ||| |||||||   ||| || || ||||| | |||||||||||||    
T  32267520 gttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttaaaaattgtaatgatatcacaaagaagggagtgaagc 32267421  T
Q  373 atgtggtagaaaactgcacgctactcaaagagattaattt 412  Q
    |||| |||||||||||||||| ||| | | ||||||||||    
T  32267420 atgtagtagaaaactgcacgcaacttagaaagattaattt 32267381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 41889587 - 41889717
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    ||||||||||| |||||||  |||||||||||| |||| |||| |||||||||||||||| | || ||||   || |||||||||||   ||| || |||    
T  41889587 ttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagagttgttgcgggctttcgaaattgttacttaaaaattgttatgatg 41889686  T
Q  352 tcacagaaaagggagtgaagcatgtggtaga 382  Q
    ||||| | ||||||||||| |||||||||||    
T  41889687 tcacaaagaagggagtgaatcatgtggtaga 41889717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 126 - 262
Target Start/End: Original strand, 41901376 - 41901512
Alignment:
Q  126 gatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattt 225  Q
    |||||| |||||| | |||| |||||||| || ||||||||  |||||||||||||||  ||||| | |  ||||| | ||||||||||| ||||  |||    
T  41901376 gatgaagacatcacaatgttcgcttccattttccccaatttgcagctgcttgatttgagcaattgttgtcgcatatttgaagaaggtattgttcaagttt 41901475  T
Q  226 taagaagatgtcataacattagacatttgaacttatc 262  Q
    |||| |  |||  ||||||||||||||||||||||||    
T  41901476 taaggatgtgttgtaacattagacatttgaacttatc 41901512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 262
Target Start/End: Complemental strand, 32267712 - 32267597
Alignment:
Q  147 gcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacatta 246  Q
    |||||||||||  |||||||  |||||||||||||||  ||||| | |  ||||||| ||||||||||  ||||  ||||||| | ||||  ||||||||    
T  32267712 gcttccatcttctccaatttgcagctgcttgatttgagcaattgttgtcgcatatctgaagaaggtatcgttcaatttttaaggatatgttgtaacatta 32267613  T
Q  247 gacatttgaacttatc 262  Q
    ||||||||||||||||    
T  32267612 gacatttgaacttatc 32267597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 17205568 - 17205527
Alignment:
Q  349 atgtcacagaaaagggagtgaagcatgtggtagaaaactgca 390  Q
    ||||||||||||| ||| |||| |||||||||||||||||||    
T  17205568 atgtcacagaaaaaggattgaaacatgtggtagaaaactgca 17205527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 252 - 391
Target Start/End: Complemental strand, 27922574 - 27922435
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||| |||| |||||  || ||| |||| ||   ||| || ||     
T  27922574 ttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtgggcttttgaaattgtcacttgaaaattgtaatgatt 27922475  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 391  Q
    ||||| | ||||||||||| ||||||||||||||||||||    
T  27922474 tcacaaagaagggagtgaaccatgtggtagaaaactgcac 27922435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 18315306 - 18315445
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| ||  ||||||  ||||||||||||||||||||| ||||||||||||||||| || | ||||| ||||||||| |  || | |||  | |||    
T  18315306 ttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgtcgtaggcttttgcaactgttattggaacgctgttgtgatg 18315405  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 391  Q
    ||||||| || ||||  ||| |||||||||||||||||||    
T  18315406 tcacagagaaaggagaaaagtatgtggtagaaaactgcac 18315445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 32151345 - 32151287
Alignment:
Q  274 ttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgtta 332  Q
    ||||||||||| |||||||| ||||||||||||||||| |||| ||||| |||||||||    
T  32151345 ttgatgatgaaacactctatgtgatctcaaagagttgtagtgggcttttgcaactgtta 32151287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 259
Target Start/End: Original strand, 34936027 - 34936134
Alignment:
Q  152 catctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacat 251  Q
    |||||||||||||||  | |||||||||||||   |||||  || |||||||||  ||||||||| |||  ||||||| ||||||  | |||||||||||    
T  34936027 catctttcccaatttgcatctgcttgatttgagcgattgcagtggcatatctaatcaaggtatttatcatgttttaaggagatgttgtgacattagacat 34936126  T
Q  252 ttgaactt 259  Q
    ||| ||||    
T  34936127 ttgtactt 34936134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 17636455 - 17636572
Alignment:
Q  273 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 372  Q
    ||||| ||||||||| | ||| |||||||||||||||||  | ||||||| ||| ||| |||| ||   |||| ||||||||| || || ||||||| ||    
T  17636455 gttgacgatgaagcattgtatgtgatctcaaagagttgtcttagacttttgcaattgtcacttgaatattgtgttaatgtcac-gagaaaggagtgaggc 17636553  T
Q  373 atgtggtagaaaactgcac 391  Q
    ||||| ||||||| |||||    
T  17636554 atgtgctagaaaattgcac 17636572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 391
Target Start/End: Original strand, 28246360 - 28246465
Alignment:
Q  286 cactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaa 385  Q
    ||||||||  |||||||||||||||| | || ||||| ||||||| |||||||   |||||   ||||||||| ||  |||||| ||||||||| |||||    
T  28246360 cactctattggatctcaaagagttgtagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaatgagtgacgcatgtggttgaaaa 28246459  T
Q  386 ctgcac 391  Q
     |||||    
T  28246460 atgcac 28246465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 273 - 412
Target Start/End: Original strand, 51113835 - 51113974
Alignment:
Q  273 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 372  Q
    |||||||||||| |||||||| ||||||| ||||||||| |||| ||||| ||||||||||| |||   ||| |  |||||||||| |||||||||||||    
T  51113835 gttgatgatgaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagc 51113934  T
Q  373 atgtggtagaaaactgcacgctactcaaagagattaattt 412  Q
    ||||||||||||| |||||   ||| | ||||||||||||    
T  51113935 atgtggtagaaaaatgcacaaaactaagagagattaattt 51113974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 13470765 - 13470904
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| ||  ||||||  ||| ||||| || ||||||||||||||||||||| |||| |||| ||||| ||||| |||||| ||   ||| ||||||    
T  13470765 ttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtgggcttttgcaactattacttgaactttgtcataatg 13470864  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 391  Q
    |||||||| |||||||||| ||||||||||| ||||||||    
T  13470865 tcacagaagagggagtgaaacatgtggtagagaactgcac 13470904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 51120926 - 51121065
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| ||| ||||||| ||||||||||||  ||| ||| | ||||||||||||||| |||| ||||| ||| |||  ||  || | |||    |||    
T  51120926 ttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtgggcttttgcaattgtctctagaaagctgtttgtatg 51121025  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 391  Q
    ||||| |||| |||||||| ||||||||||||||||||||    
T  51121026 tcacacaaaaaggagtgaaacatgtggtagaaaactgcac 51121065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 273 - 391
Target Start/End: Original strand, 51764494 - 51764612
Alignment:
Q  273 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 372  Q
    ||||||||| || ||||||||  ||||||||||| |||| | || ||||| ||||| |||||  ||   |||||||||||||  || ||||||||||| |    
T  51764494 gttgatgataaaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaac 51764593  T
Q  373 atgtggtagaaaactgcac 391  Q
    ||||||| |||||||||||    
T  51764594 atgtggttgaaaactgcac 51764612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 256
Target Start/End: Complemental strand, 1657472 - 1657378
Alignment:
Q  162 aatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacatttgaa 256  Q
    |||||| |||| ||||||||||   ||||| | ||||||||| ||||||||||| ||||  ||||||  | ||||  ||||||||||||||||||    
T  1657472 aatttacagctacttgatttgagccattgcaaagacatatctgaagaaggtattgttcatgttttaatgatatgttgtaacattagacatttgaa 1657378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 413
Target Start/End: Original strand, 45245139 - 45245279
Alignment:
Q  273 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 372  Q
    |||||||||||| ||||| || ||||||||||||||||| |||| ||||| ||||| ||| | |||  |||| || |||||||||| ||||||||||| |    
T  45245139 gttgatgatgaaacactccatgtgatctcaaagagttgtcgtgggcttttgcaactattattgaaaaaatgttatcatgtcacagataagggagtgaaac 45245238  T
Q  373 atgtggtagaaaactgcacgctactcaaagagattaatttg 413  Q
    ||||||||||||| ||||| | ||| | |||||| ||||||    
T  45245239 atgtggtagaaaattgcacacaacttacagagatcaatttg 45245279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 1037710 - 1037836
Alignment:
Q  265 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 364  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||| ||  ||   |||||| | |||||||| || ||    
T  1037710 atacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatgg 1037809  T
Q  365 agtgaagcatgtggtagaaaactgcac 391  Q
     ||||| ||||| || |||||||||||    
T  1037810 tgtgaaacatgtagtcgaaaactgcac 1037836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 414
Target Start/End: Complemental strand, 9411421 - 9411259
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| || |||||| |||||   ||||||  |||||||  ||||||||||| |||| |||||||||| |||||||||||  || | ||| ||||||    
T  9411421 ttgaacttgtcatatacaggtgttttcgatgaaatactctatgagatctcaaagaattgtcgtggacttttgcaactgttactgcaatgctgtcataatg 9411322  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgc 414  Q
    ||| ||| |||||||||| ||||||||||| ||| |||  || |||||||||||| |||||||    
T  9411321 tcagagataagggagtgatgcatgtggtaggaaattgcctgcaactcaaagagatcaatttgc 9411259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 384
Target Start/End: Original strand, 6585270 - 6585402
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| ||  ||||||  |||||||||||| |||||||| |||||||||||||||||  ||  |||||  |||| ||||| ||||| ||||| ||||    
T  6585270 ttgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgttctgcgcttttggaactattactgaaaggttgtgaaaatg 6585369  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaa 384  Q
    ||||||| |||||| |||| |||||||||||||    
T  6585370 tcacagagaagggactgaaacatgtggtagaaa 6585402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 273 - 413
Target Start/End: Complemental strand, 6402905 - 6402765
Alignment:
Q  273 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 372  Q
    |||||||||||| |||||||| |||||||||||| |||| |||| |||||  |||| ||| | | ||  ||| ||||||||||||||||||||| ||| |    
T  6402905 gttgatgatgaaacactctatgtgatctcaaagaattgtagtgggcttttgaaactattattgagagattgttataatgtcacagaaaagggagcgaaac 6402806  T
Q  373 atgtggtagaaaactgcacgctactcaaagagattaatttg 413  Q
    ||||| |||||||||| || | ||| | ||||||| |||||    
T  6402805 atgtgatagaaaactgtacacaactgagagagatttatttg 6402765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 55 - 257
Target Start/End: Complemental strand, 9411681 - 9411482
Alignment:
Q  55 attctttgatggatcttgttgtaagccccaacttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaagtgttagcttccat 154  Q
    ||||||||||| || ||| |||||| ||| | || ||||||||| |||||| || || ||    |||||||||| |||||||||||  ||| ||||||||    
T  9411681 attctttgatgaattttgctgtaaggccccaattgaagtctctaggtttggttcgcaattg---gttaagagataaaaacatcaaaaggtttgcttccat 9411585  T
Q  155 ctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataacattagacatttg 254  Q
     || ||||||||  |||||||||||||||     || | | |||||||||| ||||||||||| ||  ||||||| ||||||  ||||||||||||||||    
T  9411584 tttccccaatttgcagctgcttgatttgagcggatgttgtaacatatctaacgaaggtattttgcaggttttaaggagatgtggtaacattagacatttg 9411485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 265 - 412
Target Start/End: Original strand, 7994228 - 7994375
Alignment:
Q  265 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 364  Q
    ||||||| ||| |||| ||| |||| ||| |||||||||||| ||||  ||||||||| ||||| |||||| ||   ||| || |||| || ||  ||||    
T  7994228 atacaagggttaatgacgaaacactatatgtgatctcaaagaattgttctggacttttgcaactattacttgaactttgtaatgatgttaccgaggaggg 7994327  T
Q  365 agtgaagcatgtggtagaaaactgcacgctactcaaagagattaattt 412  Q
    |||||| |||||||||||||||||||||| ||| ||||||||| ||||    
T  7994328 agtgaaacatgtggtagaaaactgcacgcaactgaaagagatttattt 7994375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 413
Target Start/End: Complemental strand, 14820759 - 14820598
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||||||  ||||||  |||||| ||||| |||| ||||||||||| |||| |||| |||| ||||| | | | |||||| ||  |||| || |||    
T  14820759 ttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtgggcttttgcgattattacttgaaaaatgtaatgatg 14820660  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 413  Q
    ||||||| ||||| ||||| ||||||||| |||||||||| |  || | |||||||||||||    
T  14820659 tcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttg 14820598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 391
Target Start/End: Complemental strand, 6415996 - 6415893
Alignment:
Q  288 ctctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaact 387  Q
    |||||| |||||||||||| |||| | || ||||| ||||| |||||| ||   ||||||||||||||||||  ||||||||| ||||||||||| ||||    
T  6415996 ctctatgtgatctcaaagaattgtagcgggcttttgcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaact 6415897  T
Q  388 gcac 391  Q
    ||||    
T  6415896 gcac 6415893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 390
Target Start/End: Complemental strand, 19632501 - 19632367
Alignment:
Q  256 acttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcac 355  Q
    |||| ||||||||||  |||||||||||   ||| | | |||||||||||| |||| |||| ||||| ||||| ||||| |||   |||| |||| ||||    
T  19632501 acttgtcgtatacaaaggttgatgatgagcaactttttgtgatctcaaagaattgttgtgggcttttgcaactcttactgaaaaattgtgctaatatcac 19632402  T
Q  356 agaaaagggagtgaagcatgtggtagaaaactgca 390  Q
    ||| ||||||||||| || ||||||||||||||||    
T  19632401 agagaagggagtgaaacacgtggtagaaaactgca 19632367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 390
Target Start/End: Original strand, 6603248 - 6603373
Alignment:
Q  265 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 364  Q
    ||||| |||||||||||||| || |||||  ||||||||||||||||  ||| |||||  |||| ||| | |||   ||| || |||||||||| || ||    
T  6603248 atacaggtgttgatgatgaaacagtctatgcgatctcaaagagttgtcctgggcttttggaactattattgaaatattgttattatgtcacagagaaagg 6603347  T
Q  365 agtgaagcatgtggtagaaaactgca 390  Q
    |||||| |||||||||||||||||||    
T  6603348 agtgaaacatgtggtagaaaactgca 6603373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 11936322 - 11936447
Alignment:
Q  266 tacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggga 365  Q
    |||||| ||||| ||| || ||||||||  |||||||||||||||| |||| ||||| ||||||| |||||||   |||||   ||||||||| || |||    
T  11936322 tacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaagga 11936421  T
Q  366 gtgaagcatgtggtagaaaactgcac 391  Q
    |||| ||||||||| ||||| |||||    
T  11936422 gtgacgcatgtggttgaaaaatgcac 11936447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 11948302 - 11948427
Alignment:
Q  266 tacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggga 365  Q
    |||||| ||||| ||| || ||||||||  |||||||||||||||| |||| ||||| ||||||| |||||||   |||||   ||||||||| || |||    
T  11948302 tacaagagttgacgataaatcactctattggatctcaaagagttgtagtgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaagga 11948401  T
Q  366 gtgaagcatgtggtagaaaactgcac 391  Q
    |||| ||||||||| ||||| |||||    
T  11948402 gtgacgcatgtggttgaaaaatgcac 11948427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 391
Target Start/End: Complemental strand, 14818448 - 14818309
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||||||  ||||||  |||||| ||||| |||| ||||||||||| |||| ||||  ||| ||||| | | | |||||| ||   ||| ||||||    
T  14818448 ttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttctgggcttttgcgattattacttgaaaattgtaataatg 14818349  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 391  Q
    ||||||| ||||| ||||| ||||| ||||||||||||||    
T  14818348 tcacagagaagggtgtgaaacatgtagtagaaaactgcac 14818309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 391
Target Start/End: Complemental strand, 6432227 - 6432088
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| ||  ||||||| |||||||||||| |||| ||| |||||| ||||| |||| |||| ||| | ||||| || ||  |    ||||||||||    
T  6432227 ttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtgggcttctgcaactattcctgtacaattgtgataatg 6432128  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 391  Q
    ||||| | ||||||||||| | |||||||||||| |||||    
T  6432127 tcacacagaagggagtgaaacttgtggtagaaaaatgcac 6432088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 391
Target Start/End: Complemental strand, 7119202 - 7119084
Alignment:
Q  273 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 372  Q
    |||||||||||| ||||| || ||||||| |||| |||| | || |||||  |||| ||||| ||||  ||| || |||||||| |||| | |||||| |    
T  7119202 gttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagattgttattatgtcacaaaaaaagaagtgaaac 7119103  T
Q  373 atgtggtagaaaactgcac 391  Q
    |||||| ||||||||||||    
T  7119102 atgtggaagaaaactgcac 7119084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 413
Target Start/End: Complemental strand, 6394834 - 6394769
Alignment:
Q  348 aatgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 413  Q
    ||||||||||||||||| ||| | |||||||||||||||||||| | | | | |||||||||||||    
T  6394834 aatgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttg 6394769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 7119397 - 7119284
Alignment:
Q  144 ttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataaca 243  Q
    ||||||||| | || ||||||||| | || ||||||||||| | |||| || ||||||||   |||||||||| |||  ||||||| ||||||  ||| |    
T  7119397 ttagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatct---gaaggtatttgtcaagttttaaggagatgttctaaga 7119301  T
Q  244 ttagacatttgaactta 260  Q
    ||| |||||||||||||    
T  7119300 ttaaacatttgaactta 7119284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 391
Target Start/End: Complemental strand, 7131680 - 7131562
Alignment:
Q  273 gttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagc 372  Q
    |||||||||||| ||||| || ||||||| |||| |||| | || |||||  |||| ||||| ||||  ||| || |||||||| | || | |||||| |    
T  7131680 gttgatgatgaaacactccatgtgatctcgaagaattgttgcgggcttttggaactattactgaaagattgttattatgtcacaaacaaagcagtgaaac 7131581  T
Q  373 atgtggtagaaaactgcac 391  Q
    |||||| ||||||||||||    
T  7131580 atgtggaagaaaactgcac 7131562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 260
Target Start/End: Complemental strand, 7131875 - 7131762
Alignment:
Q  144 ttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataaca 243  Q
    ||||||||| | || ||||||||| | || ||||||||||| | |||| || ||||||||   |||||||||| |||  ||||||| ||||||  ||| |    
T  7131875 ttagcttcctttttccccaatttacaacttcttgatttgaatacttgcaataacatatct---gaaggtatttgtcaagttttaaggagatgttctaaga 7131779  T
Q  244 ttagacatttgaactta 260  Q
    ||| |||||||||||||    
T  7131778 ttaaacatttgaactta 7131762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 205
Target Start/End: Complemental strand, 19632733 - 19632615
Alignment:
Q  87 ttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaa 186  Q
    ||||||||||| | ||||||||  | ||||| |||||| |||||||| || | | |||| |||||  | |||||||||||  ||| ||||||||||||      
T  19632733 ttaaagtctctctatttgggtcgaaatttacggttaagtgatgaaaagattacaatgttcgcttcgttttttcccaatttgtagcggcttgatttgaatc 19632634  T
Q  187 attgctatgacatatctaa 205  Q
     ||||||| ||||||||||    
T  19632633 gttgctattacatatctaa 19632615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 260
Target Start/End: Original strand, 10579593 - 10579708
Alignment:
Q  142 tgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataa 241  Q
    ||||||||||| | || ||||||||  |||||||||||||||| | |||| |  ||||||||   ||||||||||||||  ||| | ||||||||  |||    
T  10579593 tgttagcttcctttttccccaatttgcagctgcttgatttgaatacttgcgaatacatatct---gaaggtatttttcaagtttcaggaagatgtggtaa 10579689  T
Q  242 cattagacatttgaactta 260  Q
     ||||  ||||||||||||    
T  10579690 gattaagcatttgaactta 10579708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 277 - 391
Target Start/End: Complemental strand, 546954 - 546840
Alignment:
Q  277 atgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgt 376  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||||  || |||||||  ||| ||||  | |||||||||| ||||||||||| |||||    
T  546954 atgatgaaacactctatgtgatctcaaagagttgttgtgggcttttggaattgttactggaagaatgttttcatgtcacagagaagggagtgaaacatgt 546855  T
Q  377 ggtagaaaactgcac 391  Q
    | |||||||||||||    
T  546854 gctagaaaactgcac 546840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 55908774 - 55908900
Alignment:
Q  265 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 364  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||||||| ||  ||   |||||| | |||||||| || ||    
T  55908774 atacatgtgttgatgatgaaacactctatatgatctcaaagaattgttgtgggcttttacaactgtttctggaaaattgtgatgaagtcacagagaatgg 55908873  T
Q  365 agtgaagcatgtggtagaaaactgcac 391  Q
     ||||| ||||| || |||||||||||    
T  55908874 tgtgaaacatgtagtcgaaaactgcac 55908900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 266 - 332
Target Start/End: Original strand, 1524533 - 1524599
Alignment:
Q  266 tacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgtta 332  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||| |||| ||||| |||||||||    
T  1524533 tacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtgggcttttgcaactgtta 1524599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 413
Target Start/End: Original strand, 1548457 - 1548618
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| ||  |||||||| ||||||||||| ||||| || ||||||||||||||||| |||| ||||| ||  ||||||  ||| | ||| | |||     
T  1548457 ttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtgggcttttgcacttgttacaaaaacgttgtaaaaata 1548556  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 413  Q
    ||||||| ||||||||||| ||| | | |||||||||| ||| ||| | ||| |||||||||    
T  1548557 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttg 1548618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 252 - 431
Target Start/End: Original strand, 8184063 - 8184242
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| ||  ||||||| |||||||||  ||||||||||   ||||||||||||||| |||| |||||  ||||||||||  ||   ||||| ||||    
T  8184063 ttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtgggcttttggaactgttactggaaaattgtga-aatg 8184161  T
Q  352 -tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttgcagaattgtggtaaagtg 431  Q
     |||||||  ||||||||||||||||| ||||||| ||||| | ||| |||| ||| ||||||  ||| |||| |||||||    
T  8184162 atcacagatgagggagtgaagcatgtgctagaaaattgcacacaactgaaagtgatcaatttgaggaactgtgataaagtg 8184242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 413
Target Start/End: Original strand, 1513440 - 1513598
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| || | ||||| ||||||||||||| |||||||  | ||||||||| ||||| |||| ||||| |||||  |||| ||||| ||   || ||    
T  1513440 ttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtgggcttttgcaactcatactgaaaggttg---tattg 1513536  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 413  Q
    ||||||| | ||||||||||| |||| ||||||| ||||| | ||| | |||||| ||||||    
T  1513537 tcacagagatgggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttg 1513598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 252 - 390
Target Start/End: Complemental strand, 640981 - 640843
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| ||  ||||||  |||||||||||| |||||||  ||| |||||||| |||  |||| ||||| || ||||||||  |||  ||| || |||    
T  640981 ttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaagaattgccgtggtcttttgcatctgttactggaagattgtcattatg 640882  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgca 390  Q
    | ||| | ||||||||||| |||||||||||||||||||    
T  640881 taacaaagaagggagtgaatcatgtggtagaaaactgca 640843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 252 - 393
Target Start/End: Complemental strand, 7307926 - 7307785
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| || ||||||   |||||||||||||||||   ||||||||||||||||||| || | ||||| || ||||||||  |||| |||  || ||    
T  7307926 ttgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgtaggcttttgcacctgttactggaaggttgttttattg 7307827  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcacgc 393  Q
    ||||    |  ||| |||||||||||||||||||||||||||    
T  7307826 tcacgatgactggattgaagcatgtggtagaaaactgcacgc 7307785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 260
Target Start/End: Complemental strand, 1600664 - 1600546
Alignment:
Q  142 tgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtatttttcacattttaagaagatgtcataa 241  Q
    |||| |||||||  |||||||||||  | |||||||||||||  | ||||  | |||||||| |||||||||||| |||  ||||||| |||| |  |||    
T  1600664 tgtttgcttccaattttcccaatttgcaactgcttgatttgagcagttgcattaacatatctgaagaaggtatttgtcaagttttaaggagattttctaa 1600565  T
Q  242 cattagacatttgaactta 260  Q
     ||||||||||||||||||    
T  1600564 aattagacatttgaactta 1600546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 391
Target Start/End: Complemental strand, 558542 - 558425
Alignment:
Q  274 ttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagca 373  Q
    ||||||||||||||||| || ||||||||||||||||| |||| |||||  ||||||  ||| ||   |||  |   || ||||| || |||||||||||    
T  558542 ttgatgatgaagcactccatgtgatctcaaagagttgtcgtgggcttttggaactgtatcttcaattttgtatttgcgttacagataaaggagtgaagca 558443  T
Q  374 tgtggtagaaaactgcac 391  Q
    |||| |||||||||||||    
T  558442 tgtgctagaaaactgcac 558425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 8186930 - 8187019
Alignment:
Q  127 atgaaaacatcaaagtgttagcttccatctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtattt 216  Q
    |||||||| || || ||||| ||||| | || ||||||||  || ||||||||||||   ||||||||||||||||| ||||||||||||    
T  8186930 atgaaaacctcgaaatgttatcttccttattccccaatttgcagttgcttgatttgagtcattgctatgacatatctgaagaaggtattt 8187019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 391
Target Start/End: Original strand, 53761892 - 53761941
Alignment:
Q  342 tgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaactgcac 391  Q
    |||||||||||||| || ||||||||||| ||||||| ||||||||||||    
T  53761892 tgtgataatgtcacggacaagggagtgaaacatgtggaagaaaactgcac 53761941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 385
Target Start/End: Original strand, 1489455 - 1489527
Alignment:
Q  313 gtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgtggtagaaaa 385  Q
    |||| ||||| ||||| |||||  |||| |||  |||||||||||| |||||||||||||||||| |||||||    
T  1489455 gtgggcttttgcaactcttactggaagggtgttttaatgtcacagagaagggagtgaagcatgtgctagaaaa 1489527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 331
Target Start/End: Complemental strand, 553545 - 553466
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgtt 331  Q
    |||||||| || | |||||| |||||||||||||||||  || |||| ||||||||||||  ||| ||||| ||||||||    
T  553545 ttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctgggcttttgcaactgtt 553466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 335
Target Start/End: Complemental strand, 570417 - 570334
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttactt 335  Q
    |||||||| || |||||| | |||||| | |||| ||||||| |||| |||||||||||| | || ||||| ||||||||||||    
T  570417 ttgaacttgtcatatacaggagttgataacgaagaactctatctgatttcaaagagttgtcgcgggcttttgcaactgttactt 570334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 391
Target Start/End: Original strand, 12121490 - 12121629
Alignment:
Q  252 ttgaacttatcgtatacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatg 351  Q
    |||||||| || ||||||| ||||||||||||| ||||||   | ||||||||| ||||  |||| ||||| ||||| | |||  || | ||   |  ||    
T  12121490 ttgaacttgtcatatacaaatgttgatgatgaaacactctccgtaatctcaaagtgttgccgtgggcttttgcaactctcactggaatggtgcttttttg 12121589  T
Q  352 tcacagaaaagggagtgaagcatgtggtagaaaactgcac 391  Q
    ||||||| | |||||||||||||||||||||||| |||||    
T  12121590 tcacagagatgggagtgaagcatgtggtagaaaaatgcac 12121629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 553448 - 553406
Alignment:
Q  349 atgtcacagaaaagggagtgaagcatgtggtagaaaactgcac 391  Q
    |||||||||| || |||||||| ||||||||||||||||||||    
T  553448 atgtcacagataaaggagtgaatcatgtggtagaaaactgcac 553406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 1548193 - 1548354
Alignment:
Q  55 attctttgatggatcttgttgtaagccccaacttaaagtctctatgtttgggtcacagtttacagttaagagatgaaaacatcaaagtgttagcttccat 154  Q
    ||||||| ||||| ||||||||||| ||  | |||||||| || ||||||  ||||| || ||  ||||||||||||| ||||||| | ||  |||| ||    
T  1548193 attctttcatggaccttgttgtaagacctcaattaaagtcactctgtttgactcacaattcacgcttaagagatgaaaccatcaaaatattttcttcgat 1548292  T
Q  155 ctttcccaatttagagctgcttgatttgaaaaattgctatgacatatctaaagaaggtattt 216  Q
     || ||||||||  | |||||||||||||  ||||||  || ||||||  | ||||||||||    
T  1548293 tttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtattt 1548354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 413
Target Start/End: Original strand, 1524613 - 1524677
Alignment:
Q  349 atgtcacagaaaagggagtgaagcatgtggtagaaaactgcacgctactcaaagagattaatttg 413  Q
    |||||||||| | |||||||||  ||||| ||||||||||||| | ||| | |||||||||||||    
T  1524613 atgtcacagagaggggagtgaattatgtgatagaaaactgcacacaactgagagagattaatttg 1524677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 265 - 391
Target Start/End: Original strand, 670 - 796
Alignment:
Q  265 atacaagtgttgatgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaaggg 364  Q
    |||||||||| ||||||||| |||||||||||||||| |||| |||| |||| || ||||||||||||||  ||   |||||| | |||| ||| || ||    
T  670 atacaagtgtcgatgatgaaacactctatatgatctcgaagaattgttgtgggctattacaactgttactggaaaattgtgatgaagtcatagagaatgg 769  T
Q  365 agtgaagcatgtggtagaaaactgcac 391  Q
     ||||| ||||| ||||||||||||||    
T  770 tgtgaaacatgtagtagaaaactgcac 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 277 - 414
Target Start/End: Original strand, 15092209 - 15092346
Alignment:
Q  277 atgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgt 376  Q
    ||||| || ||||||||  ||||||||||| |||| |||| ||||| ||||| |||||| ||   ||| ||||||||||||||  ||||||||| |||||    
T  15092209 atgataaaacactctatgcgatctcaaagaattgttgtgggcttttgcaactattacttgaattttgttataatgtcacagaagtgggagtgaaacatgt 15092308  T
Q  377 ggtagaaaactgcacgctactcaaagagattaatttgc 414  Q
    | ||||||||||||| | | | | ||||||||||||||    
T  15092309 gctagaaaactgcacacaattgagagagattaatttgc 15092346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 390
Target Start/End: Complemental strand, 10614634 - 10614521
Alignment:
Q  277 atgatgaagcactctatatgatctcaaagagttgtggtggacttttacaactgttacttaaaggatgtgataatgtcacagaaaagggagtgaagcatgt 376  Q
    ||||| || |||||||| ||||||| ||||  ||| |||| ||||| ||||| |||||| ||   | | |||||||||||||| | |||||||| |||||    
T  10614634 atgataaaacactctatgtgatctcgaagaactgtagtgggcttttgcaactattacttgaactttctcataatgtcacagaagaaggagtgaaacatgt 10614535  T
Q  377 ggtagaaaactgca 390  Q
    ||||||||||||||    
T  10614534 ggtagaaaactgca 10614521  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 260
Target Start/End: Complemental strand, 88999 - 88943
Alignment:
Q  204 aaagaaggtatttttcacattttaagaagatgtcataacattagacatttgaactta 260  Q
    ||||||||||||  ||| |||||||| ||||||  ||| ||||||||||||||||||    
T  88999 aaagaaggtattgatcagattttaaggagatgttgtaagattagacatttgaactta 88943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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