View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1261-Insertion-8 (Length: 473)
Name: NF1261-Insertion-8
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1261-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 3331570 - 3331086
Alignment:
| Q |
11 |
tgaatttgagactgtaattaaattgacgtatccttattattattatctatcctcggtgagtttgcttaattttattctatattctgtgagaggatcaata |
110 |
Q |
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| T |
3331570 |
tgaatttgagactgtaattaaattgatgtatccttattattattatctatcctcggtgagtttgtttaattttattctatattctgtgagaggatcaata |
3331471 |
T |
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| Q |
111 |
aaattagtactttggtgcatttaattccta---------------------tatagagtactttaaggtgaatgaaacagtacaagttact-acaagaaa |
188 |
Q |
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| T |
3331470 |
aaattagtactttggtgcatttaattcctaccacatatatatatatatatatatagagtactttaaggtgaatgaaacagtacaagttacttacaagaaa |
3331371 |
T |
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| Q |
189 |
agtagtacgaggaatgaatgcaaagaagtataatgagacaatgacggcagagaagtgttctaagcttagaacattgaataatagcaagttgttgtgcctt |
288 |
Q |
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| T |
3331370 |
agtagtacgaggaatgaatgcaaagaagtataatgagacaatgacggcagagaagtgttctaagcttagaacattgaataatagcaagttgttgtgcctt |
3331271 |
T |
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| Q |
289 |
catgcattcacttgacgaagtgtttgaaaactcatttttgcatgttaattatttcttgatcatatgtatgggcatttgatctgcatgatcagccataatc |
388 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3331270 |
catgcattcacttgatgaagtgtttgaaaactcatttttgcatgttaattatttcttgatcatatgtatgggcatttgatctgcatgatcagccataatc |
3331171 |
T |
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| Q |
389 |
aggcttgctttagcatgtgagacactacattttatgtttctggattcaaggtaacgtcttcattttatgttgtttcattattgca |
473 |
Q |
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| T |
3331170 |
aggcttgctttagcctgtgagacactacattttatgtttctggattcaaggtaacgtcttcattttatgttgtttcattattgca |
3331086 |
T |
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