View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1261-Insertion-9 (Length: 789)

Name: NF1261-Insertion-9
Description: NF1261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1261-Insertion-9
NF1261-Insertion-9
[»] chr1 (1 HSPs)
chr1 (8-789)||(37755281-37756062)


Alignment Details
Target: chr1 (Bit Score: 738; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 8 - 789
Target Start/End: Original strand, 37755281 - 37756062
Alignment:
Q  8 gcatgctcttaaatcaattcattcaattctcagtgatcttcacataagtaaagaagtaaaaatctcagtcgcatttccactccaagtcttgaggaagttg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||    
T  37755281 gcatgctcttaaatcaattcattcaattctcagtgatcttcacataagtaaagaagtaaaaatctcggtcgcatttccacttcaagtcttaaggaagttg 37755380  T
Q  108 aatgcatcacaagaacacgaaattcgtagattactttcatttataaaggaaacgaaatcgtttgtgattatagaagacaacattgatggagaattaagaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37755381 aatgcatcacaagaacacgaaattcgtagattactttcatttataaaggaaacgaaatcgtttgtgatgatagaagacaacattgatggagaattaagaa 37755480  T
Q  208 tggatgaccattttgttcaaactattatcaaacgcgctaatcttgccacttctgttcttccttgcaaagatgttcctttggttcttacaatcaagagttc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37755481 tggatgaccattttgttcaaactattatcaaacgcgctaatcttgccgcttctgttcttccttgcaaagatgttcctttggttcttacaatcaagagttc 37755580  T
Q  308 agttataccaagttcaatagaagtaactcgatttagtaaaagagtatcgaaatatttagaagcaaaaagaatagctgcattatatgtagaactgcataca 407  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37755581 agttataccaagttcaatagaagtaactcaatttagtaaaagagtatcgaaatatttagaagcaaaaagaatagctgcattatatgtagaactgcataca 37755680  T
Q  408 atagaagattcttcaatgaaagagctcaaaagggaagaggaaggtatgtttcatttgtctagaaaagagatcttaagcaaattccacagaagaaaaatta 507  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37755681 acagaagattcttcaatgaaagagctcaaaagggaagaggaaggtatgtttcatttgtctagaagagagatcttaagcaaattccacagaagaaaaatta 37755780  T
Q  508 tagataacacaaacagtccaacaaacacagtttaccctacaaatccaacaccggttattacaccctcagatacaccaaccattatagcagttccttccac 607  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37755781 tagacaacacaaacagtccaacgaacacagtttaccctacaaatccaacaccggttattacaccctcagatacaccaaccattatagcagttccttccac 37755880  T
Q  608 aaatcctgtcacaatttcccctacaaatccagctgcaatgccagtaacagttccttcaactacacctgttgttcctttagctccaacaactccaaccatt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37755881 aaatcctgtcacaatttcccctacaaatccagctgcaatgccagtaacagttccttcaactacacctgttgttcctttagctccaacaactccaaccatt 37755980  T
Q  708 acaccggcaccggtcttcaatccagctacagctcctacaacagttccaggtgcaccaccagtaacatcttatccacctccag 789  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37755981 acaccggcaccggtcttcaatccagctacaactcctacaacagttccaggtgcaccaccagtaacatcttatccacctccag 37756062  T

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