View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12610_high_1 (Length: 976)
Name: NF12610_high_1
Description: NF12610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12610_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 587; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 17 - 639
Target Start/End: Complemental strand, 46020687 - 46020067
Alignment:
| Q |
17 |
tcaataactttacctatctgtttcaaaacaacaacatcagaatcagatgatgaaactctgttccttttataatatgaaaacactgtattttaccttgtta |
116 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46020687 |
tcaacaactttacctatctgtttcaaaacaacaacatcagaatcagatgatgaaactctgttccttttataatatgaaaacactgtattttaccttgtta |
46020588 |
T |
|
| Q |
117 |
aaatgttcatattgcctgttacctaggccaaaaacaccatatgtgagctgttgaagccaggttcccctctcgtctttaccctaaaattaaggccctccaa |
216 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46020587 |
aaatgttcatattgcctgttacctaggccaaaaacaccatatgtgagctgttgaagccaggttcccctctcgtctttaccctaaaattaaggccctccaa |
46020488 |
T |
|
| Q |
217 |
aacttagaatcacttaaagccatatacaatccttaaacatgcaatttacttaaaagtggtgtaatgtaacagcaaacctcagtaaaccatttatagaatc |
316 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
46020487 |
aacttagaatcacttaaa-ccatatacaatccttaaacatgcaatttacttaaaagtggtgtaatgtaacaacaaacctcagtaaaccatttatagaatc |
46020389 |
T |
|
| Q |
317 |
ttgcggcattgtcagttggctctccatctccataactgccgtgtcaagttcaaatgcaccatattattatacatttcaaatcattaataaatgcatttta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46020388 |
ttgcggcattgtcagttggctctccatctccataactgccgtgtcaagttcaaatgcaccatattattatacatttcaaataattaataaatgcatttta |
46020289 |
T |
|
| Q |
417 |
atcttttttatgtatgaaatcttacgtcgccagcatgaaaaatgcaagagtttctttcttcagcttctcttcatattgatcatcatccgctgcatagtca |
516 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46020288 |
atcttttttatgtaagaaatcttacgtcgccagcatgaaaaatgcaagagtttctttcttcagcttctcttcatattgatcatcatccgctgcatagtca |
46020189 |
T |
|
| Q |
517 |
tcctagttcagattcaaaatacatacatcagtacttcagccaaagaaataatttaaaaattgaagatcctgtaaaataatatcacatgccttctagaact |
616 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46020188 |
tcct-gttcagattcaaaatacatacatcagtacttcagccaaagaaataatttaaaaattgaagatcctgtaaaataatatcacatgccttctagaact |
46020090 |
T |
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| Q |
617 |
cccctagtgagaaatcaaacatt |
639 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
46020089 |
cctctagtgagaaatcaaacatt |
46020067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 532 - 930
Target Start/End: Complemental strand, 46020043 - 46019646
Alignment:
| Q |
532 |
aaaatacatacatcagtacttcagccaaagaaataatttaaaaattgaagatcctgtaaaataatatcacatgccttctagaactcccctagtgagaaat |
631 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
46020043 |
aaaatacatacatcagtacttcagccaaagaaataatttaaaaattgaagatcctgtaaaataatatcacatgccttctagaactcctctagtgagaaat |
46019944 |
T |
|
| Q |
632 |
caaacattnnnnnnnntgtggcccactaatttacagtcacaagggaagaattggggaaatttcattattttaatataacttaccatatcaacaactttga |
731 |
Q |
| |
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|||||||| |||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46019943 |
caaacattaaaaaaaatgtggctccctaatttacagtcataagggaagaattggggaaatttcattattt-aatataacttaccatatcaacaactttga |
46019845 |
T |
|
| Q |
732 |
caaatgctttttcatatcttgccttgatctcctctgccaatgcctgtattaagaataaaaaagtaattatacagcccatagatttgaagatgaactgtat |
831 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46019844 |
caaatgctttttcatatcttgccttgatctcctctgccaatgcctgtattaaaaataaaaaagtaattatacagcccatagatttgaagatgaactgtat |
46019745 |
T |
|
| Q |
832 |
tgctctgtagggagagtgtggttggcacccagggttgaacatttcaaccacactagaaaaagggaaactaatttcatctttgtagatacattttccata |
930 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
46019744 |
tgctctgtagggagagtgtggttggtacccagggttgaacatttcaaccacactagaaaaagggaaactaatttcatctttgtaggtacattttccata |
46019646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 922 - 962
Target Start/End: Complemental strand, 46019461 - 46019421
Alignment:
| Q |
922 |
ttttccataagctaaaatcatttctagctaaaatatgatgt |
962 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
46019461 |
ttttccataagctaaaatcatttctagctaaaatatgatgt |
46019421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 301 - 350
Target Start/End: Complemental strand, 53278517 - 53278468
Alignment:
| Q |
301 |
aaccatttatagaatcttgcggcattgtcagttggctctccatctccata |
350 |
Q |
| |
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||||||||||| ||||| |||||||| ||||||||||| ||||| ||||| |
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| T |
53278517 |
aaccatttataaaatctcgcggcattatcagttggctcaccatcaccata |
53278468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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