View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12610_high_5 (Length: 214)
Name: NF12610_high_5
Description: NF12610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12610_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 39575616 - 39575433
Alignment:
| Q |
17 |
aaactgaaggttaccgtacaacctaatgtgtcggattttgtaccgaacgcatttttaaatggactagaactaatgacagtggttaactcctcgggtccaa |
116 |
Q |
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| T |
39575616 |
aaactgaaggttaccgtacaacctaatgtgttggattttgtaccgaacgcatttttaaatggactagaactaatgacagtggttaactcctcgggtccaa |
39575517 |
T |
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| Q |
117 |
ttccccctgatgatttggattcggggaagattagtcttcctgtggtgctgggttcggtcgttggaggtttagttctggtctctg |
200 |
Q |
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| T |
39575516 |
ttccccctgatgatttggattcggggaagattagtcttcctgtggtgctgggttcggtcgttggaggtttagttctggtttctg |
39575433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 39520971 - 39520794
Alignment:
| Q |
20 |
ctgaaggttaccgtacaacctaatgtgtcggattttgtaccgaacgcatttttaaatggactagaactaatgacagtggttaactcctcgggtccaattc |
119 |
Q |
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| T |
39520971 |
ctgaatgttaccgtacaacctaatgtgtcggattttgtaccgaaagcatttttaaatgggctagaactaatgaaagtgattgaacaatctagtgaaattc |
39520872 |
T |
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| Q |
120 |
cccctgatgatttggattcggggaagattagtcttcctgtggtgctgggttcggtcgttggaggtttagttctggtctctg |
200 |
Q |
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| T |
39520871 |
ccttcgatgatttggattc---aaaggttagtcttcctgtagtggtgggttcagtggttggaggtgtagttttggtttctg |
39520794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 58 - 187
Target Start/End: Complemental strand, 39524421 - 39524292
Alignment:
| Q |
58 |
accgaacgcatttttaaatggactagaactaatgacagtggttaactcctcgggtccaattccccctgatgatttggattcggggaagattagtcttcct |
157 |
Q |
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| T |
39524421 |
accgaatgcttttttaaacgggctagaactaatgaaagtgattgaatcatcaggcccaattcccaatgatgattcggattcgaggaagattagtcttcct |
39524322 |
T |
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| Q |
158 |
gtggtgctgggttcggtcgttggaggttta |
187 |
Q |
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| T |
39524321 |
gtggtggtgggttcggtgattggaggttta |
39524292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 39543712 - 39543580
Alignment:
| Q |
58 |
accgaacgcatttttaaatggactagaactaatgacagtggttaactcctcgggtccaattccccctgatgatttggattcggggaagattagtcttcct |
157 |
Q |
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| T |
39543712 |
accgaaggcatttttaaacgggatagaactaatgacaatgattaaatcgtccagtccaattcccttagatggtttggatttgagaaagattaatcttcct |
39543613 |
T |
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| Q |
158 |
gtggtgctgggttcggtcgttggaggtttagtt |
190 |
Q |
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| T |
39543612 |
gtggtggtgggttcggtggttggaggtttagtt |
39543580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 39580154 - 39579969
Alignment:
| Q |
21 |
tgaaggttaccgtacaacctaatgtgtcggattttgtaccgaacgcatttttaaatggactagaactaatgacagtggttaactcctcgggtccaattcc |
120 |
Q |
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||||||||||| || ||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||| |||| || | | || ||| ||| || |
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| T |
39580154 |
tgaaggttaccataaaacctaatgtgaccgattttgtaccgaatgcatttttaaatgggctagaactaatgaaagtgattgaaccatcaggtttaatccc |
39580055 |
T |
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| Q |
121 |
ccctgatgatttgg------attcggggaagattagtcttcctgtggtgctgggttcggtcgttggaggtttagttctggtctctg |
200 |
Q |
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| T |
39580054 |
ctctgatgatttgggttccaattcaaagaagattcgtcttccggttgtgttgggttcggttcttggaggtttagctctggtttctg |
39579969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 195
Target Start/End: Complemental strand, 39510676 - 39510541
Alignment:
| Q |
57 |
taccgaacgcatttttaaatggactagaactaatgacagtggttaactcctcgggtccaattccccctgatgatttggattcggggaagattagtcttcc |
156 |
Q |
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||||||| |||||||||||||| |||||||||||| |||| || | || || ||||||||| |||||| |||||||| ||| |||||||||| |
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| T |
39510676 |
taccgaatgcatttttaaatgggctagaactaatggaagtgattgaacaatctagtgaaattcccccggatgatatggattcg---aaggttagtcttcc |
39510580 |
T |
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| Q |
157 |
tgtggtgctgggttcggtcgttggaggtttagttctggt |
195 |
Q |
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| T |
39510579 |
tgtggtggtgggttcggttgttggaggtttagttttggt |
39510541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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